Gene : Seita.5G097600 S. italica v2.2
Defline:  (1 of 1) PTHR31412:SF5 - ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  976
Name:  ? Seita.5G097600 Secondary Identifier:  ? PAC:32685068
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G097600 0.5kb upstream 0.5kb upstream 4708 true scaffold_5: 8280500-8285207 Setaria italica
Seita.5G097600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8284708-8285207 Setaria italica
Seita.5G097600 0.5kb downstream 0.5kb downstream 4708 true scaffold_5: 8280000-8284707 Setaria italica
Seita.5G097600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8280000-8280499 Setaria italica
Seita.5G097600 1.0kb upstream 1.0kb upstream 5208 true scaffold_5: 8280500-8285707 Setaria italica
Seita.5G097600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8284708-8285707 Setaria italica
Seita.5G097600 1.0kb downstream 1.0kb downstream 5208 true scaffold_5: 8279500-8284707 Setaria italica
Seita.5G097600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8279500-8280499 Setaria italica
Seita.5G097600 2.0kb upstream 2.0kb upstream 6208 true scaffold_5: 8280500-8286707 Setaria italica
Seita.5G097600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8284708-8286707 Setaria italica
Seita.5G097600 2.0kb downstream 2.0kb downstream 6208 true scaffold_5: 8278500-8284707 Setaria italica
Seita.5G097600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8278500-8280499 Setaria italica
Seita.5G097600 5.0kb upstream 5.0kb upstream 9208 true scaffold_5: 8280500-8289707 Setaria italica
Seita.5G097600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8284708-8289707 Setaria italica
Seita.5G097600 5.0kb downstream 5.0kb downstream 9208 true scaffold_5: 8275500-8284707 Setaria italica
Seita.5G097600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8275500-8280499 Setaria italica
Seita.5G097600 10.0kb upstream 10.0kb upstream 14208 true scaffold_5: 8280500-8294707 Setaria italica
Seita.5G097600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8284708-8294707 Setaria italica
Seita.5G097600 10.0kb downstream 10.0kb downstream 14208 true scaffold_5: 8270500-8284707 Setaria italica
Seita.5G097600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8270500-8280499 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175944 5267 Panicoideae View MSA
124573045 5269 Grass View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.798        
cufflinks 2.751        
cufflinks 7.479        
cufflinks 8.256        
cufflinks 12.371     High  
cufflinks 2.695        
cufflinks 12.726        
cufflinks 9.717        
cufflinks 19.05     High High
cufflinks 2.895        
cufflinks 3.501        
cufflinks 0.047     Low Low
cufflinks 0.151     Low Low
cufflinks 4.257        
cufflinks 0.069     Low Low
cufflinks 17.138     High  
cufflinks 0.074     Low Low
cufflinks 4.568        
cufflinks 8.251        
cufflinks 0.059     Low Low

0 Strain