Gene : Seita.5G097700 S. italica v2.2
Defline:  (1 of 1) PTHR15840 - CGI-121 FAMILY MEMBER Genomic Order:  977
Name:  ? Seita.5G097700 Secondary Identifier:  ? PAC:32685672
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G097700 0.5kb upstream 0.5kb upstream 2772 true scaffold_5: 8284358-8287129 Setaria italica
Seita.5G097700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8284358-8284857 Setaria italica
Seita.5G097700 0.5kb downstream 0.5kb downstream 2772 true scaffold_5: 8284858-8287629 Setaria italica
Seita.5G097700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8287130-8287629 Setaria italica
Seita.5G097700 1.0kb upstream 1.0kb upstream 3272 true scaffold_5: 8283858-8287129 Setaria italica
Seita.5G097700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8283858-8284857 Setaria italica
Seita.5G097700 1.0kb downstream 1.0kb downstream 3272 true scaffold_5: 8284858-8288129 Setaria italica
Seita.5G097700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8287130-8288129 Setaria italica
Seita.5G097700 2.0kb upstream 2.0kb upstream 4272 true scaffold_5: 8282858-8287129 Setaria italica
Seita.5G097700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8282858-8284857 Setaria italica
Seita.5G097700 2.0kb downstream 2.0kb downstream 4272 true scaffold_5: 8284858-8289129 Setaria italica
Seita.5G097700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8287130-8289129 Setaria italica
Seita.5G097700 5.0kb upstream 5.0kb upstream 7272 true scaffold_5: 8279858-8287129 Setaria italica
Seita.5G097700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8279858-8284857 Setaria italica
Seita.5G097700 5.0kb downstream 5.0kb downstream 7272 true scaffold_5: 8284858-8292129 Setaria italica
Seita.5G097700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8287130-8292129 Setaria italica
Seita.5G097700 10.0kb upstream 10.0kb upstream 12272 true scaffold_5: 8274858-8287129 Setaria italica
Seita.5G097700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8274858-8284857 Setaria italica
Seita.5G097700 10.0kb downstream 10.0kb downstream 12272 true scaffold_5: 8284858-8297129 Setaria italica
Seita.5G097700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8287130-8297129 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026161 5273 Angiosperm View MSA
122189082 5267 Panicoideae View MSA
124576189 5269 Grass View MSA
121345637 5274 Embryophyte View MSA
123425208 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.244        
cufflinks 4.756        
cufflinks 5.812        
cufflinks 7.955       High
cufflinks 5.487        
cufflinks 4.447        
cufflinks 3.277       Low
cufflinks 4.612        
cufflinks 5.425        
cufflinks 7.718       High
cufflinks 5.143        
cufflinks 3.966       Low
cufflinks 4.662        
cufflinks 6.47        
cufflinks 4.317        
cufflinks 5.319        
cufflinks 4.8        
cufflinks 9.19       High
cufflinks 5.502        
cufflinks 3.472       Low

0 Strain