Gene : Seita.5G099500 S. italica v2.2
Defline:  (1 of 2) PF00805 - Pentapeptide repeats (8 copies) (Pentapeptide) Genomic Order:  995
Name:  ? Seita.5G099500 Secondary Identifier:  ? PAC:32680782
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G099500 0.5kb upstream 0.5kb upstream 2719 true scaffold_5: 8446477-8449195 Setaria italica
Seita.5G099500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8448696-8449195 Setaria italica
Seita.5G099500 0.5kb downstream 0.5kb downstream 2719 true scaffold_5: 8445977-8448695 Setaria italica
Seita.5G099500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8445977-8446476 Setaria italica
Seita.5G099500 1.0kb upstream 1.0kb upstream 3219 true scaffold_5: 8446477-8449695 Setaria italica
Seita.5G099500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8448696-8449695 Setaria italica
Seita.5G099500 1.0kb downstream 1.0kb downstream 3219 true scaffold_5: 8445477-8448695 Setaria italica
Seita.5G099500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8445477-8446476 Setaria italica
Seita.5G099500 2.0kb upstream 2.0kb upstream 4219 true scaffold_5: 8446477-8450695 Setaria italica
Seita.5G099500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8448696-8450695 Setaria italica
Seita.5G099500 2.0kb downstream 2.0kb downstream 4219 true scaffold_5: 8444477-8448695 Setaria italica
Seita.5G099500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8444477-8446476 Setaria italica
Seita.5G099500 5.0kb upstream 5.0kb upstream 7219 true scaffold_5: 8446477-8453695 Setaria italica
Seita.5G099500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8448696-8453695 Setaria italica
Seita.5G099500 5.0kb downstream 5.0kb downstream 7219 true scaffold_5: 8441477-8448695 Setaria italica
Seita.5G099500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8441477-8446476 Setaria italica
Seita.5G099500 10.0kb upstream 10.0kb upstream 12219 true scaffold_5: 8446477-8458695 Setaria italica
Seita.5G099500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8448696-8458695 Setaria italica
Seita.5G099500 10.0kb downstream 10.0kb downstream 12219 true scaffold_5: 8436477-8448695 Setaria italica
Seita.5G099500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8436477-8446476 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185172 5267 Panicoideae View MSA
124577951 5269 Grass View MSA
122045781 5273 Angiosperm View MSA
121346461 5274 Embryophyte View MSA
123426937 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.583        
cufflinks 4.095        
cufflinks 12.935     High  
cufflinks 20.496     High  
cufflinks 23.368     High  
cufflinks 4.454        
cufflinks 15.964     High  
cufflinks 27.709     High  
cufflinks 28.273     High  
cufflinks 2.822        
cufflinks 2.196        
cufflinks 0.173       Low
cufflinks 0.932        
cufflinks 3.554        
cufflinks 0.005     Low Low
cufflinks 18.712     High  
cufflinks 0.155       Low
cufflinks 8.037        
cufflinks 9.857        
cufflinks 0.061     Low Low

0 Strain