Gene : Seita.5G103700 S. italica v2.2
Defline:  (1 of 3) PTHR11035 - PTPLA DOMAIN PROTEIN Genomic Order:  1037
Name:  ? Seita.5G103700 Secondary Identifier:  ? PAC:32686368
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5080 Setaria italica pathologic  
Sitalica PWY-6433 Setaria italica pathologic  
Sitalica PWY-6598 Setaria italica pathologic  
Sitalica PWY-7036 Setaria italica pathologic  
Sitalica PWY-7601 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  
Sitalica PWY-7619 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G103700 0.5kb upstream 0.5kb upstream 4182 true scaffold_5: 8779422-8783603 Setaria italica
Seita.5G103700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8779422-8779921 Setaria italica
Seita.5G103700 0.5kb downstream 0.5kb downstream 4182 true scaffold_5: 8779922-8784103 Setaria italica
Seita.5G103700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8783604-8784103 Setaria italica
Seita.5G103700 1.0kb upstream 1.0kb upstream 4682 true scaffold_5: 8778922-8783603 Setaria italica
Seita.5G103700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8778922-8779921 Setaria italica
Seita.5G103700 1.0kb downstream 1.0kb downstream 4682 true scaffold_5: 8779922-8784603 Setaria italica
Seita.5G103700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8783604-8784603 Setaria italica
Seita.5G103700 2.0kb upstream 2.0kb upstream 5682 true scaffold_5: 8777922-8783603 Setaria italica
Seita.5G103700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8777922-8779921 Setaria italica
Seita.5G103700 2.0kb downstream 2.0kb downstream 5682 true scaffold_5: 8779922-8785603 Setaria italica
Seita.5G103700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8783604-8785603 Setaria italica
Seita.5G103700 5.0kb upstream 5.0kb upstream 8682 true scaffold_5: 8774922-8783603 Setaria italica
Seita.5G103700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8774922-8779921 Setaria italica
Seita.5G103700 5.0kb downstream 5.0kb downstream 8682 true scaffold_5: 8779922-8788603 Setaria italica
Seita.5G103700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8783604-8788603 Setaria italica
Seita.5G103700 10.0kb upstream 10.0kb upstream 13682 true scaffold_5: 8769922-8783603 Setaria italica
Seita.5G103700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8769922-8779921 Setaria italica
Seita.5G103700 10.0kb downstream 10.0kb downstream 13682 true scaffold_5: 8779922-8793603 Setaria italica
Seita.5G103700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8783604-8793603 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192679 5267 Panicoideae View MSA
124576589 5269 Grass View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.879     High  
cufflinks 45.287     High High
cufflinks 4.902       Low
cufflinks 6.326        
cufflinks 6.48        
cufflinks 35.769     High High
cufflinks 21.761     High  
cufflinks 24.641     High High
cufflinks 23.087     High  
cufflinks 17.133     High  
cufflinks 19.704     High  
cufflinks 6.866        
cufflinks 15.269     High  
cufflinks 5.018       Low
cufflinks 15.32     High  
cufflinks 6.863        
cufflinks 7.576        
cufflinks 4.422       Low
cufflinks 6.203        
cufflinks 12.543        

0 Strain