Gene : Seita.5G109900 S. italica v2.2
Genomic Order:  1099 Name:  ? Seita.5G109900
Secondary Identifier:  ? PAC:32685298
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G109900 0.5kb upstream 0.5kb upstream 1025 true scaffold_5: 9265587-9266611 Setaria italica
Seita.5G109900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9265587-9266086 Setaria italica
Seita.5G109900 0.5kb downstream 0.5kb downstream 1025 true scaffold_5: 9266087-9267111 Setaria italica
Seita.5G109900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9266612-9267111 Setaria italica
Seita.5G109900 1.0kb upstream 1.0kb upstream 1525 true scaffold_5: 9265087-9266611 Setaria italica
Seita.5G109900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9265087-9266086 Setaria italica
Seita.5G109900 1.0kb downstream 1.0kb downstream 1525 true scaffold_5: 9266087-9267611 Setaria italica
Seita.5G109900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9266612-9267611 Setaria italica
Seita.5G109900 2.0kb upstream 2.0kb upstream 2525 true scaffold_5: 9264087-9266611 Setaria italica
Seita.5G109900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9264087-9266086 Setaria italica
Seita.5G109900 2.0kb downstream 2.0kb downstream 2525 true scaffold_5: 9266087-9268611 Setaria italica
Seita.5G109900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9266612-9268611 Setaria italica
Seita.5G109900 5.0kb upstream 5.0kb upstream 5525 true scaffold_5: 9261087-9266611 Setaria italica
Seita.5G109900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9261087-9266086 Setaria italica
Seita.5G109900 5.0kb downstream 5.0kb downstream 5525 true scaffold_5: 9266087-9271611 Setaria italica
Seita.5G109900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9266612-9271611 Setaria italica
Seita.5G109900 10.0kb upstream 10.0kb upstream 10525 true scaffold_5: 9256087-9266611 Setaria italica
Seita.5G109900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9256087-9266086 Setaria italica
Seita.5G109900 10.0kb downstream 10.0kb downstream 10525 true scaffold_5: 9266087-9276611 Setaria italica
Seita.5G109900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9266612-9276611 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121794617 5273 Angiosperm Singleton cluster - no MSA
122054160 5267 Panicoideae Singleton cluster - no MSA
124354002 5269 Grass Singleton cluster - no MSA
121065791 5274 Embryophyte Singleton cluster - no MSA
123105455 5275 Viridiplantae Singleton cluster - no MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.114     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  
cufflinks 0.08     Low  
cufflinks 1.056       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain