Gene : Seita.5G110300 S. italica v2.2
Genomic Order:  1103 Name:  ? Seita.5G110300
Secondary Identifier:  ? PAC:32683116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G110300 0.5kb upstream 0.5kb upstream 8567 true scaffold_5: 9279645-9288211 Setaria italica
Seita.5G110300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9287712-9288211 Setaria italica
Seita.5G110300 0.5kb downstream 0.5kb downstream 8567 true scaffold_5: 9279145-9287711 Setaria italica
Seita.5G110300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9279145-9279644 Setaria italica
Seita.5G110300 1.0kb upstream 1.0kb upstream 9067 true scaffold_5: 9279645-9288711 Setaria italica
Seita.5G110300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9287712-9288711 Setaria italica
Seita.5G110300 1.0kb downstream 1.0kb downstream 9067 true scaffold_5: 9278645-9287711 Setaria italica
Seita.5G110300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9278645-9279644 Setaria italica
Seita.5G110300 2.0kb upstream 2.0kb upstream 10067 true scaffold_5: 9279645-9289711 Setaria italica
Seita.5G110300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9287712-9289711 Setaria italica
Seita.5G110300 2.0kb downstream 2.0kb downstream 10067 true scaffold_5: 9277645-9287711 Setaria italica
Seita.5G110300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9277645-9279644 Setaria italica
Seita.5G110300 5.0kb upstream 5.0kb upstream 13067 true scaffold_5: 9279645-9292711 Setaria italica
Seita.5G110300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9287712-9292711 Setaria italica
Seita.5G110300 5.0kb downstream 5.0kb downstream 13067 true scaffold_5: 9274645-9287711 Setaria italica
Seita.5G110300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9274645-9279644 Setaria italica
Seita.5G110300 10.0kb upstream 10.0kb upstream 18067 true scaffold_5: 9279645-9297711 Setaria italica
Seita.5G110300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9287712-9297711 Setaria italica
Seita.5G110300 10.0kb downstream 10.0kb downstream 18067 true scaffold_5: 9269645-9287711 Setaria italica
Seita.5G110300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9269645-9279644 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196908 5267 Panicoideae View MSA
124580956 5269 Grass View MSA
122046253 5273 Angiosperm View MSA
121350010 5274 Embryophyte View MSA
123423861 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.743        
cufflinks 5.586        
cufflinks 1.648       Low
cufflinks 1.796       Low
cufflinks 1.598       Low
cufflinks 4.538        
cufflinks 4.944        
cufflinks 3.366        
cufflinks 2.624        
cufflinks 2.445        
cufflinks 4.524        
cufflinks 8.736       High
cufflinks 6.148        
cufflinks 2.954        
cufflinks 6.73       High
cufflinks 4.586        
cufflinks 6.378        
cufflinks 5.81        
cufflinks 2.292       Low
cufflinks 7.156       High

0 Strain