Gene : Seita.5G113100 S. italica v2.2
Defline:  (1 of 2) PTHR10909:SF331 - ACYL-COENZYME A OXIDASE 4, PEROXISOMAL Genomic Order:  1131
Name:  ? Seita.5G113100 Secondary Identifier:  ? PAC:32681163
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5136 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-6837 Setaria italica pathologic  
Sitalica PWY-735 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G113100 0.5kb upstream 0.5kb upstream 5446 true scaffold_5: 9434403-9439848 Setaria italica
Seita.5G113100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9439349-9439848 Setaria italica
Seita.5G113100 0.5kb downstream 0.5kb downstream 5446 true scaffold_5: 9433903-9439348 Setaria italica
Seita.5G113100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9433903-9434402 Setaria italica
Seita.5G113100 1.0kb upstream 1.0kb upstream 5946 true scaffold_5: 9434403-9440348 Setaria italica
Seita.5G113100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9439349-9440348 Setaria italica
Seita.5G113100 1.0kb downstream 1.0kb downstream 5946 true scaffold_5: 9433403-9439348 Setaria italica
Seita.5G113100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9433403-9434402 Setaria italica
Seita.5G113100 2.0kb upstream 2.0kb upstream 6946 true scaffold_5: 9434403-9441348 Setaria italica
Seita.5G113100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9439349-9441348 Setaria italica
Seita.5G113100 2.0kb downstream 2.0kb downstream 6946 true scaffold_5: 9432403-9439348 Setaria italica
Seita.5G113100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9432403-9434402 Setaria italica
Seita.5G113100 5.0kb upstream 5.0kb upstream 9946 true scaffold_5: 9434403-9444348 Setaria italica
Seita.5G113100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9439349-9444348 Setaria italica
Seita.5G113100 5.0kb downstream 5.0kb downstream 9946 true scaffold_5: 9429403-9439348 Setaria italica
Seita.5G113100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9429403-9434402 Setaria italica
Seita.5G113100 10.0kb upstream 10.0kb upstream 14946 true scaffold_5: 9434403-9449348 Setaria italica
Seita.5G113100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9439349-9449348 Setaria italica
Seita.5G113100 10.0kb downstream 10.0kb downstream 14946 true scaffold_5: 9424403-9439348 Setaria italica
Seita.5G113100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9424403-9434402 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190295 5267 Panicoideae View MSA
124573207 5269 Grass View MSA
122043325 5273 Angiosperm View MSA
121347950 5274 Embryophyte View MSA
123424845 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.531     High High
cufflinks 7.592        
cufflinks 12.207     High  
cufflinks 13.869     High  
cufflinks 10.298        
cufflinks 8.004        
cufflinks 8.26        
cufflinks 6.39       Low
cufflinks 6.879        
cufflinks 7.431        
cufflinks 10.795        
cufflinks 9.354        
cufflinks 11.06        
cufflinks 12.677        
cufflinks 7.066        
cufflinks 8.278        
cufflinks 7.33        
cufflinks 26.763     High High
cufflinks 16.34     High High
cufflinks 5.913       Low

0 Strain