Gene : Seita.5G114200 S. italica v2.2
Defline:  (1 of 29) PF01190 - Pollen proteins Ole e I like (Pollen_Ole_e_I) Genomic Order:  1142
Name:  ? Seita.5G114200 Secondary Identifier:  ? PAC:32682965
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G114200 0.5kb upstream 0.5kb upstream 1354 true scaffold_5: 9550109-9551462 Setaria italica
Seita.5G114200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9550963-9551462 Setaria italica
Seita.5G114200 0.5kb downstream 0.5kb downstream 1354 true scaffold_5: 9549609-9550962 Setaria italica
Seita.5G114200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9549609-9550108 Setaria italica
Seita.5G114200 1.0kb upstream 1.0kb upstream 1854 true scaffold_5: 9550109-9551962 Setaria italica
Seita.5G114200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9550963-9551962 Setaria italica
Seita.5G114200 1.0kb downstream 1.0kb downstream 1854 true scaffold_5: 9549109-9550962 Setaria italica
Seita.5G114200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9549109-9550108 Setaria italica
Seita.5G114200 2.0kb upstream 2.0kb upstream 2854 true scaffold_5: 9550109-9552962 Setaria italica
Seita.5G114200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9550963-9552962 Setaria italica
Seita.5G114200 2.0kb downstream 2.0kb downstream 2854 true scaffold_5: 9548109-9550962 Setaria italica
Seita.5G114200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9548109-9550108 Setaria italica
Seita.5G114200 5.0kb upstream 5.0kb upstream 5854 true scaffold_5: 9550109-9555962 Setaria italica
Seita.5G114200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9550963-9555962 Setaria italica
Seita.5G114200 5.0kb downstream 5.0kb downstream 5854 true scaffold_5: 9545109-9550962 Setaria italica
Seita.5G114200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9545109-9550108 Setaria italica
Seita.5G114200 10.0kb upstream 10.0kb upstream 10854 true scaffold_5: 9550109-9560962 Setaria italica
Seita.5G114200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9550963-9560962 Setaria italica
Seita.5G114200 10.0kb downstream 10.0kb downstream 10854 true scaffold_5: 9540109-9550962 Setaria italica
Seita.5G114200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9540109-9550108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184335 5267 Panicoideae View MSA
124583602 5269 Grass View MSA
122047345 5273 Angiosperm View MSA
121310733 5274 Embryophyte View MSA
123348146 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.061        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.213        
cufflinks 10.093        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.541        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 21.993     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 10.358        

0 Strain