Gene : Seita.5G115300 S. italica v2.2
Defline:  (1 of 2) PTHR11800:SF13 - DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 Genomic Order:  1153
Name:  ? Seita.5G115300 Secondary Identifier:  ? PAC:32681637
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G115300 0.5kb upstream 0.5kb upstream 5131 true scaffold_5: 9608888-9614018 Setaria italica
Seita.5G115300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9608888-9609387 Setaria italica
Seita.5G115300 0.5kb downstream 0.5kb downstream 5131 true scaffold_5: 9609388-9614518 Setaria italica
Seita.5G115300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9614019-9614518 Setaria italica
Seita.5G115300 1.0kb upstream 1.0kb upstream 5631 true scaffold_5: 9608388-9614018 Setaria italica
Seita.5G115300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9608388-9609387 Setaria italica
Seita.5G115300 1.0kb downstream 1.0kb downstream 5631 true scaffold_5: 9609388-9615018 Setaria italica
Seita.5G115300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9614019-9615018 Setaria italica
Seita.5G115300 2.0kb upstream 2.0kb upstream 6631 true scaffold_5: 9607388-9614018 Setaria italica
Seita.5G115300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9607388-9609387 Setaria italica
Seita.5G115300 2.0kb downstream 2.0kb downstream 6631 true scaffold_5: 9609388-9616018 Setaria italica
Seita.5G115300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9614019-9616018 Setaria italica
Seita.5G115300 5.0kb upstream 5.0kb upstream 9631 true scaffold_5: 9604388-9614018 Setaria italica
Seita.5G115300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9604388-9609387 Setaria italica
Seita.5G115300 5.0kb downstream 5.0kb downstream 9631 true scaffold_5: 9609388-9619018 Setaria italica
Seita.5G115300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9614019-9619018 Setaria italica
Seita.5G115300 10.0kb upstream 10.0kb upstream 14631 true scaffold_5: 9599388-9614018 Setaria italica
Seita.5G115300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9599388-9609387 Setaria italica
Seita.5G115300 10.0kb downstream 10.0kb downstream 14631 true scaffold_5: 9609388-9624018 Setaria italica
Seita.5G115300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9614019-9624018 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185899 5267 Panicoideae View MSA
124573072 5269 Grass View MSA
122043698 5273 Angiosperm View MSA
121344052 5274 Embryophyte View MSA
123424148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.248        
cufflinks 6.919        
cufflinks 6.306        
cufflinks 5.918        
cufflinks 4.812       Low
cufflinks 5.808        
cufflinks 4.604       Low
cufflinks 5.941        
cufflinks 4.093       Low
cufflinks 4.98        
cufflinks 6.33        
cufflinks 6.974        
cufflinks 5.009        
cufflinks 7.246       High
cufflinks 7.73       High
cufflinks 5.558        
cufflinks 7.274       High
cufflinks 7.45       High
cufflinks 4.28       Low
cufflinks 6.49        

0 Strain