Gene : Seita.5G114700 S. italica v2.2
Defline:  (1 of 1) PTHR12320:SF7 - PROTEIN PHOSPHATASE 2C 26-RELATED Genomic Order:  1147
Name:  ? Seita.5G114700 Secondary Identifier:  ? PAC:32682383
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G114700 0.5kb upstream 0.5kb upstream 3734 true scaffold_5: 9570343-9574076 Setaria italica
Seita.5G114700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9573577-9574076 Setaria italica
Seita.5G114700 0.5kb downstream 0.5kb downstream 3734 true scaffold_5: 9569843-9573576 Setaria italica
Seita.5G114700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9569843-9570342 Setaria italica
Seita.5G114700 1.0kb upstream 1.0kb upstream 4234 true scaffold_5: 9570343-9574576 Setaria italica
Seita.5G114700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9573577-9574576 Setaria italica
Seita.5G114700 1.0kb downstream 1.0kb downstream 4234 true scaffold_5: 9569343-9573576 Setaria italica
Seita.5G114700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9569343-9570342 Setaria italica
Seita.5G114700 2.0kb upstream 2.0kb upstream 5234 true scaffold_5: 9570343-9575576 Setaria italica
Seita.5G114700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9573577-9575576 Setaria italica
Seita.5G114700 2.0kb downstream 2.0kb downstream 5234 true scaffold_5: 9568343-9573576 Setaria italica
Seita.5G114700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9568343-9570342 Setaria italica
Seita.5G114700 5.0kb upstream 5.0kb upstream 8234 true scaffold_5: 9570343-9578576 Setaria italica
Seita.5G114700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9573577-9578576 Setaria italica
Seita.5G114700 5.0kb downstream 5.0kb downstream 8234 true scaffold_5: 9565343-9573576 Setaria italica
Seita.5G114700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9565343-9570342 Setaria italica
Seita.5G114700 10.0kb upstream 10.0kb upstream 13234 true scaffold_5: 9570343-9583576 Setaria italica
Seita.5G114700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9573577-9583576 Setaria italica
Seita.5G114700 10.0kb downstream 10.0kb downstream 13234 true scaffold_5: 9560343-9573576 Setaria italica
Seita.5G114700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9560343-9570342 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176505 5267 Panicoideae View MSA
124572026 5269 Grass View MSA
122044601 5273 Angiosperm View MSA
121346475 5274 Embryophyte View MSA
123428574 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.346        
cufflinks 1.736        
cufflinks 12.599     High  
cufflinks 16.491     High High
cufflinks 17.727     High High
cufflinks 1.511        
cufflinks 6.499        
cufflinks 13.076        
cufflinks 11.448        
cufflinks 0.47        
cufflinks 1.01        
cufflinks 0.043     Low Low
cufflinks 0.07     Low Low
cufflinks 5.786        
cufflinks 0.012     Low Low
cufflinks 12.903     High  
cufflinks 0.044     Low Low
cufflinks 1.339        
cufflinks 13.865     High  
cufflinks 0.049     Low Low

0 Strain