Gene : Seita.5G114800 S. italica v2.2
Defline:  (1 of 1) PTHR12875:SF0 - GOLGI TO ER TRAFFIC PROTEIN 4 HOMOLOG Genomic Order:  1148
Name:  ? Seita.5G114800 Secondary Identifier:  ? PAC:32680946
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G114800 0.5kb upstream 0.5kb upstream 7456 true scaffold_5: 9575005-9582460 Setaria italica
Seita.5G114800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9575005-9575504 Setaria italica
Seita.5G114800 0.5kb downstream 0.5kb downstream 7456 true scaffold_5: 9575505-9582960 Setaria italica
Seita.5G114800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9582461-9582960 Setaria italica
Seita.5G114800 1.0kb upstream 1.0kb upstream 7956 true scaffold_5: 9574505-9582460 Setaria italica
Seita.5G114800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9574505-9575504 Setaria italica
Seita.5G114800 1.0kb downstream 1.0kb downstream 7956 true scaffold_5: 9575505-9583460 Setaria italica
Seita.5G114800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9582461-9583460 Setaria italica
Seita.5G114800 2.0kb upstream 2.0kb upstream 8956 true scaffold_5: 9573505-9582460 Setaria italica
Seita.5G114800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9573505-9575504 Setaria italica
Seita.5G114800 2.0kb downstream 2.0kb downstream 8956 true scaffold_5: 9575505-9584460 Setaria italica
Seita.5G114800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9582461-9584460 Setaria italica
Seita.5G114800 5.0kb upstream 5.0kb upstream 11956 true scaffold_5: 9570505-9582460 Setaria italica
Seita.5G114800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9570505-9575504 Setaria italica
Seita.5G114800 5.0kb downstream 5.0kb downstream 11956 true scaffold_5: 9575505-9587460 Setaria italica
Seita.5G114800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9582461-9587460 Setaria italica
Seita.5G114800 10.0kb upstream 10.0kb upstream 16956 true scaffold_5: 9565505-9582460 Setaria italica
Seita.5G114800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9565505-9575504 Setaria italica
Seita.5G114800 10.0kb downstream 10.0kb downstream 16956 true scaffold_5: 9575505-9592460 Setaria italica
Seita.5G114800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9582461-9592460 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199225 5267 Panicoideae View MSA
124576984 5269 Grass View MSA
122042403 5273 Angiosperm View MSA
121347409 5274 Embryophyte View MSA
123423833 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.002        
cufflinks 4.703        
cufflinks 3.17       Low
cufflinks 3.194       Low
cufflinks 2.828       Low
cufflinks 4.699        
cufflinks 4.264        
cufflinks 4.334        
cufflinks 3.287       Low
cufflinks 3.747        
cufflinks 3.574        
cufflinks 5.067        
cufflinks 4.854        
cufflinks 3.718        
cufflinks 5.811       High
cufflinks 4.806        
cufflinks 5.516       High
cufflinks 4.821        
cufflinks 3.226       Low
cufflinks 5.54       High

0 Strain