Gene : Seita.5G116600 S. italica v2.2
Defline:  (1 of 5) 3.1.31.1 - Micrococcal nuclease / Micrococcal endonuclease Genomic Order:  1166
Name:  ? Seita.5G116600 Secondary Identifier:  ? PAC:32684297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G116600 0.5kb upstream 0.5kb upstream 3725 true scaffold_5: 9683312-9687036 Setaria italica
Seita.5G116600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9683312-9683811 Setaria italica
Seita.5G116600 0.5kb downstream 0.5kb downstream 3725 true scaffold_5: 9683812-9687536 Setaria italica
Seita.5G116600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9687037-9687536 Setaria italica
Seita.5G116600 1.0kb upstream 1.0kb upstream 4225 true scaffold_5: 9682812-9687036 Setaria italica
Seita.5G116600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9682812-9683811 Setaria italica
Seita.5G116600 1.0kb downstream 1.0kb downstream 4225 true scaffold_5: 9683812-9688036 Setaria italica
Seita.5G116600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9687037-9688036 Setaria italica
Seita.5G116600 2.0kb upstream 2.0kb upstream 5225 true scaffold_5: 9681812-9687036 Setaria italica
Seita.5G116600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9681812-9683811 Setaria italica
Seita.5G116600 2.0kb downstream 2.0kb downstream 5225 true scaffold_5: 9683812-9689036 Setaria italica
Seita.5G116600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9687037-9689036 Setaria italica
Seita.5G116600 5.0kb upstream 5.0kb upstream 8225 true scaffold_5: 9678812-9687036 Setaria italica
Seita.5G116600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9678812-9683811 Setaria italica
Seita.5G116600 5.0kb downstream 5.0kb downstream 8225 true scaffold_5: 9683812-9692036 Setaria italica
Seita.5G116600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9687037-9692036 Setaria italica
Seita.5G116600 10.0kb upstream 10.0kb upstream 13225 true scaffold_5: 9673812-9687036 Setaria italica
Seita.5G116600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9673812-9683811 Setaria italica
Seita.5G116600 10.0kb downstream 10.0kb downstream 13225 true scaffold_5: 9683812-9697036 Setaria italica
Seita.5G116600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9687037-9697036 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181944 5267 Panicoideae View MSA
124582244 5269 Grass View MSA
122046760 5273 Angiosperm View MSA
121347603 5274 Embryophyte View MSA
123428455 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.848     High High
cufflinks 6.403       Low
cufflinks 8.335        
cufflinks 13.226     High  
cufflinks 7.267       Low
cufflinks 4.181       Low
cufflinks 13.135        
cufflinks 10.736        
cufflinks 9.653        
cufflinks 15.271        
cufflinks 15.404     High  
cufflinks 14.168     High  
cufflinks 13.87     High  
cufflinks 14.655     High  
cufflinks 10.352        
cufflinks 11.045        
cufflinks 14.301     High  
cufflinks 25.792     High High
cufflinks 9.904        
cufflinks 11.081        

0 Strain