Gene : Seita.5G120800 S. italica v2.2
Defline:  (1 of 453) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1208
Name:  ? Seita.5G120800 Secondary Identifier:  ? PAC:32681491
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G120800 0.5kb upstream 0.5kb upstream 3470 true scaffold_5: 10137874-10141343 Setaria italica
Seita.5G120800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10137874-10138373 Setaria italica
Seita.5G120800 0.5kb downstream 0.5kb downstream 3470 true scaffold_5: 10138374-10141843 Setaria italica
Seita.5G120800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10141344-10141843 Setaria italica
Seita.5G120800 1.0kb upstream 1.0kb upstream 3970 true scaffold_5: 10137374-10141343 Setaria italica
Seita.5G120800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10137374-10138373 Setaria italica
Seita.5G120800 1.0kb downstream 1.0kb downstream 3970 true scaffold_5: 10138374-10142343 Setaria italica
Seita.5G120800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10141344-10142343 Setaria italica
Seita.5G120800 2.0kb upstream 2.0kb upstream 4970 true scaffold_5: 10136374-10141343 Setaria italica
Seita.5G120800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10136374-10138373 Setaria italica
Seita.5G120800 2.0kb downstream 2.0kb downstream 4970 true scaffold_5: 10138374-10143343 Setaria italica
Seita.5G120800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10141344-10143343 Setaria italica
Seita.5G120800 5.0kb upstream 5.0kb upstream 7970 true scaffold_5: 10133374-10141343 Setaria italica
Seita.5G120800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10133374-10138373 Setaria italica
Seita.5G120800 5.0kb downstream 5.0kb downstream 7970 true scaffold_5: 10138374-10146343 Setaria italica
Seita.5G120800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10141344-10146343 Setaria italica
Seita.5G120800 10.0kb upstream 10.0kb upstream 12970 true scaffold_5: 10128374-10141343 Setaria italica
Seita.5G120800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10128374-10138373 Setaria italica
Seita.5G120800 10.0kb downstream 10.0kb downstream 12970 true scaffold_5: 10138374-10151343 Setaria italica
Seita.5G120800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10141344-10151343 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041181 5273 Angiosperm View MSA
122187228 5267 Panicoideae View MSA
124581916 5269 Grass View MSA
121309811 5274 Embryophyte View MSA
123347464 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.343        
cufflinks 1.95        
cufflinks 5.386       High
cufflinks 3.154        
cufflinks 1.107        
cufflinks 1.747        
cufflinks 1.026        
cufflinks 1.421        
cufflinks 1.164        
cufflinks 1.548        
cufflinks 1.201        
cufflinks 1.595        
cufflinks 1.019        
cufflinks 9.387       High
cufflinks 1.145        
cufflinks 1.43        
cufflinks 1.819        
cufflinks 1.897        
cufflinks 8.063       High
cufflinks 1.738        

0 Strain