Gene : Seita.5G119500 S. italica v2.2
Defline:  (1 of 1) PTHR16212:SF4 - FOCADHESIN Genomic Order:  1195
Name:  ? Seita.5G119500 Secondary Identifier:  ? PAC:32685972
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G119500 0.5kb upstream 0.5kb upstream 14326 true scaffold_5: 10010171-10024496 Setaria italica
Seita.5G119500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10023997-10024496 Setaria italica
Seita.5G119500 0.5kb downstream 0.5kb downstream 14326 true scaffold_5: 10009671-10023996 Setaria italica
Seita.5G119500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10009671-10010170 Setaria italica
Seita.5G119500 1.0kb upstream 1.0kb upstream 14826 true scaffold_5: 10010171-10024996 Setaria italica
Seita.5G119500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10023997-10024996 Setaria italica
Seita.5G119500 1.0kb downstream 1.0kb downstream 14826 true scaffold_5: 10009171-10023996 Setaria italica
Seita.5G119500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10009171-10010170 Setaria italica
Seita.5G119500 2.0kb upstream 2.0kb upstream 15826 true scaffold_5: 10010171-10025996 Setaria italica
Seita.5G119500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10023997-10025996 Setaria italica
Seita.5G119500 2.0kb downstream 2.0kb downstream 15826 true scaffold_5: 10008171-10023996 Setaria italica
Seita.5G119500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10008171-10010170 Setaria italica
Seita.5G119500 5.0kb upstream 5.0kb upstream 18826 true scaffold_5: 10010171-10028996 Setaria italica
Seita.5G119500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10023997-10028996 Setaria italica
Seita.5G119500 5.0kb downstream 5.0kb downstream 18826 true scaffold_5: 10005171-10023996 Setaria italica
Seita.5G119500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10005171-10010170 Setaria italica
Seita.5G119500 10.0kb upstream 10.0kb upstream 23826 true scaffold_5: 10010171-10033996 Setaria italica
Seita.5G119500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10023997-10033996 Setaria italica
Seita.5G119500 10.0kb downstream 10.0kb downstream 23826 true scaffold_5: 10000171-10023996 Setaria italica
Seita.5G119500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10000171-10010170 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191000 5267 Panicoideae View MSA
124585241 5269 Grass View MSA
122044820 5273 Angiosperm View MSA
121344294 5274 Embryophyte View MSA
123424915 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.187       High
cufflinks 2.437       High
cufflinks 1.515        
cufflinks 1.188        
cufflinks 0.892       Low
cufflinks 2.209       High
cufflinks 1.883        
cufflinks 1.011       Low
cufflinks 1.247        
cufflinks 0.871       Low
cufflinks 1.874        
cufflinks 1.403        
cufflinks 1.295        
cufflinks 1.228        
cufflinks 1.672        
cufflinks 2.42       High
cufflinks 1.166        
cufflinks 2.093       High
cufflinks 0.937       Low
cufflinks 1.5        

0 Strain