Gene : Seita.5G124100 S. italica v2.2
Defline:  (1 of 1) PTHR11453//PTHR11453:SF40 - ANION EXCHANGE PROTEIN Genomic Order:  1241
Name:  ? Seita.5G124100 Secondary Identifier:  ? PAC:32682078
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G124100 0.5kb upstream 0.5kb upstream 5346 true scaffold_5: 10396705-10402050 Setaria italica
Seita.5G124100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10401551-10402050 Setaria italica
Seita.5G124100 0.5kb downstream 0.5kb downstream 5346 true scaffold_5: 10396205-10401550 Setaria italica
Seita.5G124100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10396205-10396704 Setaria italica
Seita.5G124100 1.0kb upstream 1.0kb upstream 5846 true scaffold_5: 10396705-10402550 Setaria italica
Seita.5G124100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10401551-10402550 Setaria italica
Seita.5G124100 1.0kb downstream 1.0kb downstream 5846 true scaffold_5: 10395705-10401550 Setaria italica
Seita.5G124100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10395705-10396704 Setaria italica
Seita.5G124100 2.0kb upstream 2.0kb upstream 6846 true scaffold_5: 10396705-10403550 Setaria italica
Seita.5G124100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10401551-10403550 Setaria italica
Seita.5G124100 2.0kb downstream 2.0kb downstream 6846 true scaffold_5: 10394705-10401550 Setaria italica
Seita.5G124100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10394705-10396704 Setaria italica
Seita.5G124100 5.0kb upstream 5.0kb upstream 9846 true scaffold_5: 10396705-10406550 Setaria italica
Seita.5G124100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10401551-10406550 Setaria italica
Seita.5G124100 5.0kb downstream 5.0kb downstream 9846 true scaffold_5: 10391705-10401550 Setaria italica
Seita.5G124100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10391705-10396704 Setaria italica
Seita.5G124100 10.0kb upstream 10.0kb upstream 14846 true scaffold_5: 10396705-10411550 Setaria italica
Seita.5G124100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10401551-10411550 Setaria italica
Seita.5G124100 10.0kb downstream 10.0kb downstream 14846 true scaffold_5: 10386705-10401550 Setaria italica
Seita.5G124100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10386705-10396704 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176474 5267 Panicoideae View MSA
124571434 5269 Grass View MSA
122044781 5273 Angiosperm View MSA
121349388 5274 Embryophyte View MSA
123428770 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.541       Low
cufflinks 6.601        
cufflinks 31.538     High High
cufflinks 27.203     High High
cufflinks 19.697     High High
cufflinks 4.214        
cufflinks 15.346     High  
cufflinks 13.094        
cufflinks 8.806        
cufflinks 0.722        
cufflinks 0.826        
cufflinks 0.497       Low
cufflinks 1.223        
cufflinks 16.047     High  
cufflinks 0.988        
cufflinks 1.489        
cufflinks 0.279       Low
cufflinks 0.571       Low
cufflinks 43.753     High High
cufflinks 0.766        

0 Strain