Gene : Seita.5G047000 S. italica v2.2
Defline:  (1 of 5) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  470
Name:  ? Seita.5G047000 Secondary Identifier:  ? PAC:32682557
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LEU-DEG2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G047000 0.5kb upstream 0.5kb upstream 5242 true scaffold_5: 4226020-4231261 Setaria italica
Seita.5G047000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4226020-4226519 Setaria italica
Seita.5G047000 0.5kb downstream 0.5kb downstream 5242 true scaffold_5: 4226520-4231761 Setaria italica
Seita.5G047000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4231262-4231761 Setaria italica
Seita.5G047000 1.0kb upstream 1.0kb upstream 5742 true scaffold_5: 4225520-4231261 Setaria italica
Seita.5G047000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4225520-4226519 Setaria italica
Seita.5G047000 1.0kb downstream 1.0kb downstream 5742 true scaffold_5: 4226520-4232261 Setaria italica
Seita.5G047000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4231262-4232261 Setaria italica
Seita.5G047000 2.0kb upstream 2.0kb upstream 6742 true scaffold_5: 4224520-4231261 Setaria italica
Seita.5G047000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4224520-4226519 Setaria italica
Seita.5G047000 2.0kb downstream 2.0kb downstream 6742 true scaffold_5: 4226520-4233261 Setaria italica
Seita.5G047000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4231262-4233261 Setaria italica
Seita.5G047000 5.0kb upstream 5.0kb upstream 9742 true scaffold_5: 4221520-4231261 Setaria italica
Seita.5G047000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4221520-4226519 Setaria italica
Seita.5G047000 5.0kb downstream 5.0kb downstream 9742 true scaffold_5: 4226520-4236261 Setaria italica
Seita.5G047000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4231262-4236261 Setaria italica
Seita.5G047000 10.0kb upstream 10.0kb upstream 14742 true scaffold_5: 4216520-4231261 Setaria italica
Seita.5G047000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4216520-4226519 Setaria italica
Seita.5G047000 10.0kb downstream 10.0kb downstream 14742 true scaffold_5: 4226520-4241261 Setaria italica
Seita.5G047000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4231262-4241261 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195839 5267 Panicoideae View MSA
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.113     High High
cufflinks 4.701       Low
cufflinks 14.393     High  
cufflinks 20.898     High  
cufflinks 15.771     High  
cufflinks 4.616       Low
cufflinks 6.643        
cufflinks 8.694        
cufflinks 7.943        
cufflinks 17.612     High  
cufflinks 21.583     High  
cufflinks 16.951     High  
cufflinks 15.77     High  
cufflinks 9.47        
cufflinks 6.539       Low
cufflinks 11.75        
cufflinks 12.029        
cufflinks 63.943     High High
cufflinks 14.581     High  
cufflinks 7.214        

0 Strain