Gene : Seita.5G047600 S. italica v2.2
Defline:  (1 of 2) PTHR12917//PTHR12917:SF20 - ASPARTYL PROTEASE DDI-RELATED Genomic Order:  476
Name:  ? Seita.5G047600 Secondary Identifier:  ? PAC:32683183
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G047600 0.5kb upstream 0.5kb upstream 6383 true scaffold_5: 4283038-4289420 Setaria italica
Seita.5G047600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4288921-4289420 Setaria italica
Seita.5G047600 0.5kb downstream 0.5kb downstream 6383 true scaffold_5: 4282538-4288920 Setaria italica
Seita.5G047600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4282538-4283037 Setaria italica
Seita.5G047600 1.0kb upstream 1.0kb upstream 6883 true scaffold_5: 4283038-4289920 Setaria italica
Seita.5G047600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4288921-4289920 Setaria italica
Seita.5G047600 1.0kb downstream 1.0kb downstream 6883 true scaffold_5: 4282038-4288920 Setaria italica
Seita.5G047600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4282038-4283037 Setaria italica
Seita.5G047600 2.0kb upstream 2.0kb upstream 7883 true scaffold_5: 4283038-4290920 Setaria italica
Seita.5G047600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4288921-4290920 Setaria italica
Seita.5G047600 2.0kb downstream 2.0kb downstream 7883 true scaffold_5: 4281038-4288920 Setaria italica
Seita.5G047600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4281038-4283037 Setaria italica
Seita.5G047600 5.0kb upstream 5.0kb upstream 10883 true scaffold_5: 4283038-4293920 Setaria italica
Seita.5G047600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4288921-4293920 Setaria italica
Seita.5G047600 5.0kb downstream 5.0kb downstream 10883 true scaffold_5: 4278038-4288920 Setaria italica
Seita.5G047600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4278038-4283037 Setaria italica
Seita.5G047600 10.0kb upstream 10.0kb upstream 15883 true scaffold_5: 4283038-4298920 Setaria italica
Seita.5G047600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4288921-4298920 Setaria italica
Seita.5G047600 10.0kb downstream 10.0kb downstream 15883 true scaffold_5: 4273038-4288920 Setaria italica
Seita.5G047600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4273038-4283037 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195908 5267 Panicoideae View MSA
124576560 5269 Grass View MSA
122046571 5273 Angiosperm View MSA
121349564 5274 Embryophyte View MSA
123424365 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.696        
cufflinks 5.245        
cufflinks 3.707       Low
cufflinks 3.806       Low
cufflinks 2.88       Low
cufflinks 4.876        
cufflinks 4.444        
cufflinks 4.435        
cufflinks 2.988       Low
cufflinks 6.307        
cufflinks 5.339        
cufflinks 7.506       High
cufflinks 6.84        
cufflinks 4.848        
cufflinks 8.978       High
cufflinks 4.954        
cufflinks 7.325       High
cufflinks 7.395       High
cufflinks 4.681        
cufflinks 7.073        

0 Strain