Gene : Seita.5G046000 S. italica v2.2
Defline:  (1 of 1) PTHR24067:SF44 - UBIQUITIN-CONJUGATING ENZYME E2 C Genomic Order:  460
Name:  ? Seita.5G046000 Secondary Identifier:  ? PAC:32682543
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G046000 0.5kb upstream 0.5kb upstream 1876 true scaffold_5: 4157654-4159529 Setaria italica
Seita.5G046000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4157654-4158153 Setaria italica
Seita.5G046000 0.5kb downstream 0.5kb downstream 1876 true scaffold_5: 4158154-4160029 Setaria italica
Seita.5G046000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4159530-4160029 Setaria italica
Seita.5G046000 1.0kb upstream 1.0kb upstream 2376 true scaffold_5: 4157154-4159529 Setaria italica
Seita.5G046000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4157154-4158153 Setaria italica
Seita.5G046000 1.0kb downstream 1.0kb downstream 2376 true scaffold_5: 4158154-4160529 Setaria italica
Seita.5G046000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4159530-4160529 Setaria italica
Seita.5G046000 2.0kb upstream 2.0kb upstream 3376 true scaffold_5: 4156154-4159529 Setaria italica
Seita.5G046000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4156154-4158153 Setaria italica
Seita.5G046000 2.0kb downstream 2.0kb downstream 3376 true scaffold_5: 4158154-4161529 Setaria italica
Seita.5G046000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4159530-4161529 Setaria italica
Seita.5G046000 5.0kb upstream 5.0kb upstream 6376 true scaffold_5: 4153154-4159529 Setaria italica
Seita.5G046000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4153154-4158153 Setaria italica
Seita.5G046000 5.0kb downstream 5.0kb downstream 6376 true scaffold_5: 4158154-4164529 Setaria italica
Seita.5G046000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4159530-4164529 Setaria italica
Seita.5G046000 10.0kb upstream 10.0kb upstream 11376 true scaffold_5: 4148154-4159529 Setaria italica
Seita.5G046000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4148154-4158153 Setaria italica
Seita.5G046000 10.0kb downstream 10.0kb downstream 11376 true scaffold_5: 4158154-4169529 Setaria italica
Seita.5G046000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4159530-4169529 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176063 5267 Panicoideae View MSA
124571522 5269 Grass View MSA
122046674 5273 Angiosperm View MSA
121349130 5274 Embryophyte View MSA
123424862 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.129        
cufflinks 15.587     High  
cufflinks 0.013     Low Low
cufflinks 0.072     Low Low
cufflinks 0.108       Low
cufflinks 16.207     High  
cufflinks 13.561     High  
cufflinks 24.161     High  
cufflinks 7.988        
cufflinks 23.625     High  
cufflinks 10.574        
cufflinks 7.328        
cufflinks 4.338        
cufflinks 0.173       Low
cufflinks 12.475        
cufflinks 0.789        
cufflinks 14.744     High  
cufflinks 0.293        
cufflinks 0.144       Low
cufflinks 17.407     High  

0 Strain