Gene : Seita.5G049500 S. italica v2.2
Defline:  (1 of 1) PTHR16201:SF34 - LYSOSOMAL AMINO ACID TRANSPORTER 1 Genomic Order:  495
Name:  ? Seita.5G049500 Secondary Identifier:  ? PAC:32682967
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G049500 0.5kb upstream 0.5kb upstream 7401 true scaffold_5: 4451151-4458551 Setaria italica
Seita.5G049500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4451151-4451650 Setaria italica
Seita.5G049500 0.5kb downstream 0.5kb downstream 7401 true scaffold_5: 4451651-4459051 Setaria italica
Seita.5G049500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4458552-4459051 Setaria italica
Seita.5G049500 1.0kb upstream 1.0kb upstream 7901 true scaffold_5: 4450651-4458551 Setaria italica
Seita.5G049500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4450651-4451650 Setaria italica
Seita.5G049500 1.0kb downstream 1.0kb downstream 7901 true scaffold_5: 4451651-4459551 Setaria italica
Seita.5G049500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4458552-4459551 Setaria italica
Seita.5G049500 2.0kb upstream 2.0kb upstream 8901 true scaffold_5: 4449651-4458551 Setaria italica
Seita.5G049500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4449651-4451650 Setaria italica
Seita.5G049500 2.0kb downstream 2.0kb downstream 8901 true scaffold_5: 4451651-4460551 Setaria italica
Seita.5G049500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4458552-4460551 Setaria italica
Seita.5G049500 5.0kb upstream 5.0kb upstream 11901 true scaffold_5: 4446651-4458551 Setaria italica
Seita.5G049500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4446651-4451650 Setaria italica
Seita.5G049500 5.0kb downstream 5.0kb downstream 11901 true scaffold_5: 4451651-4463551 Setaria italica
Seita.5G049500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4458552-4463551 Setaria italica
Seita.5G049500 10.0kb upstream 10.0kb upstream 16901 true scaffold_5: 4441651-4458551 Setaria italica
Seita.5G049500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4441651-4451650 Setaria italica
Seita.5G049500 10.0kb downstream 10.0kb downstream 16901 true scaffold_5: 4451651-4468551 Setaria italica
Seita.5G049500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4458552-4468551 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184336 5267 Panicoideae View MSA
124572269 5269 Grass View MSA
122043599 5273 Angiosperm View MSA
121344706 5274 Embryophyte View MSA
123427265 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.818     High  
cufflinks 3.051       Low
cufflinks 51.832     High  
cufflinks 57.282     High  
cufflinks 54.706     High  
cufflinks 4.814       Low
cufflinks 30.767     High  
cufflinks 34.274     High  
cufflinks 34.205     High  
cufflinks 20.603     High  
cufflinks 26.439     High  
cufflinks 28.262     High  
cufflinks 23.121     High  
cufflinks 43.039     High  
cufflinks 20.479     High  
cufflinks 106.789     High High
cufflinks 24.773     High  
cufflinks 190.663     High High
cufflinks 51.148     High  
cufflinks 19.739     High  

0 Strain