Gene : Seita.5G048100 S. italica v2.2
Defline:  (1 of 13) PF04759 - Protein of unknown function, DUF617 (DUF617) Genomic Order:  481
Name:  ? Seita.5G048100 Secondary Identifier:  ? PAC:32683898
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G048100 0.5kb upstream 0.5kb upstream 1370 true scaffold_5: 4327241-4328610 Setaria italica
Seita.5G048100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4327241-4327740 Setaria italica
Seita.5G048100 0.5kb downstream 0.5kb downstream 1370 true scaffold_5: 4327741-4329110 Setaria italica
Seita.5G048100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4328611-4329110 Setaria italica
Seita.5G048100 1.0kb upstream 1.0kb upstream 1870 true scaffold_5: 4326741-4328610 Setaria italica
Seita.5G048100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4326741-4327740 Setaria italica
Seita.5G048100 1.0kb downstream 1.0kb downstream 1870 true scaffold_5: 4327741-4329610 Setaria italica
Seita.5G048100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4328611-4329610 Setaria italica
Seita.5G048100 2.0kb upstream 2.0kb upstream 2870 true scaffold_5: 4325741-4328610 Setaria italica
Seita.5G048100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4325741-4327740 Setaria italica
Seita.5G048100 2.0kb downstream 2.0kb downstream 2870 true scaffold_5: 4327741-4330610 Setaria italica
Seita.5G048100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4328611-4330610 Setaria italica
Seita.5G048100 5.0kb upstream 5.0kb upstream 5870 true scaffold_5: 4322741-4328610 Setaria italica
Seita.5G048100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4322741-4327740 Setaria italica
Seita.5G048100 5.0kb downstream 5.0kb downstream 5870 true scaffold_5: 4327741-4333610 Setaria italica
Seita.5G048100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4328611-4333610 Setaria italica
Seita.5G048100 10.0kb upstream 10.0kb upstream 10870 true scaffold_5: 4317741-4328610 Setaria italica
Seita.5G048100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4317741-4327740 Setaria italica
Seita.5G048100 10.0kb downstream 10.0kb downstream 10870 true scaffold_5: 4327741-4338610 Setaria italica
Seita.5G048100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4328611-4338610 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175948 5267 Panicoideae View MSA
124581681 5269 Grass View MSA
122044454 5273 Angiosperm View MSA
121349765 5274 Embryophyte View MSA
123381434 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain