Gene : Seita.5G051100 S. italica v2.2
Defline:  (1 of 2) PTHR10535//PTHR10535:SF4 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Genomic Order:  511
Name:  ? Seita.5G051100 Secondary Identifier:  ? PAC:32682934
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G051100 0.5kb upstream 0.5kb upstream 3496 true scaffold_5: 4558396-4561891 Setaria italica
Seita.5G051100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4561392-4561891 Setaria italica
Seita.5G051100 0.5kb downstream 0.5kb downstream 3496 true scaffold_5: 4557896-4561391 Setaria italica
Seita.5G051100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4557896-4558395 Setaria italica
Seita.5G051100 1.0kb upstream 1.0kb upstream 3996 true scaffold_5: 4558396-4562391 Setaria italica
Seita.5G051100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4561392-4562391 Setaria italica
Seita.5G051100 1.0kb downstream 1.0kb downstream 3996 true scaffold_5: 4557396-4561391 Setaria italica
Seita.5G051100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4557396-4558395 Setaria italica
Seita.5G051100 2.0kb upstream 2.0kb upstream 4996 true scaffold_5: 4558396-4563391 Setaria italica
Seita.5G051100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4561392-4563391 Setaria italica
Seita.5G051100 2.0kb downstream 2.0kb downstream 4996 true scaffold_5: 4556396-4561391 Setaria italica
Seita.5G051100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4556396-4558395 Setaria italica
Seita.5G051100 5.0kb upstream 5.0kb upstream 7996 true scaffold_5: 4558396-4566391 Setaria italica
Seita.5G051100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4561392-4566391 Setaria italica
Seita.5G051100 5.0kb downstream 5.0kb downstream 7996 true scaffold_5: 4553396-4561391 Setaria italica
Seita.5G051100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4553396-4558395 Setaria italica
Seita.5G051100 10.0kb upstream 10.0kb upstream 12996 true scaffold_5: 4558396-4571391 Setaria italica
Seita.5G051100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4561392-4571391 Setaria italica
Seita.5G051100 10.0kb downstream 10.0kb downstream 12996 true scaffold_5: 4548396-4561391 Setaria italica
Seita.5G051100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4548396-4558395 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185204 5267 Panicoideae View MSA
124579078 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.337        
cufflinks 7.542       High
cufflinks 1.916       Low
cufflinks 2.088       Low
cufflinks 2.451       Low
cufflinks 6.752       High
cufflinks 3.966        
cufflinks 3.761        
cufflinks 2.733        
cufflinks 10.459       High
cufflinks 4.978        
cufflinks 4.978        
cufflinks 4.782        
cufflinks 3.118        
cufflinks 6.038        
cufflinks 3.381        
cufflinks 6.173        
cufflinks 4.569        
cufflinks 2.381       Low
cufflinks 5.243        

0 Strain