Gene : Seita.5G051700 S. italica v2.2
Defline:  (1 of 1) PF14966 - DNA repair REX1-B (DNA_repr_REX1B) Genomic Order:  517
Name:  ? Seita.5G051700 Secondary Identifier:  ? PAC:32684211
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G051700 0.5kb upstream 0.5kb upstream 6742 true scaffold_5: 4602126-4608867 Setaria italica
Seita.5G051700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4602126-4602625 Setaria italica
Seita.5G051700 0.5kb downstream 0.5kb downstream 6742 true scaffold_5: 4602626-4609367 Setaria italica
Seita.5G051700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4608868-4609367 Setaria italica
Seita.5G051700 1.0kb upstream 1.0kb upstream 7242 true scaffold_5: 4601626-4608867 Setaria italica
Seita.5G051700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4601626-4602625 Setaria italica
Seita.5G051700 1.0kb downstream 1.0kb downstream 7242 true scaffold_5: 4602626-4609867 Setaria italica
Seita.5G051700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4608868-4609867 Setaria italica
Seita.5G051700 2.0kb upstream 2.0kb upstream 8242 true scaffold_5: 4600626-4608867 Setaria italica
Seita.5G051700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4600626-4602625 Setaria italica
Seita.5G051700 2.0kb downstream 2.0kb downstream 8242 true scaffold_5: 4602626-4610867 Setaria italica
Seita.5G051700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4608868-4610867 Setaria italica
Seita.5G051700 5.0kb upstream 5.0kb upstream 11242 true scaffold_5: 4597626-4608867 Setaria italica
Seita.5G051700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4597626-4602625 Setaria italica
Seita.5G051700 5.0kb downstream 5.0kb downstream 11242 true scaffold_5: 4602626-4613867 Setaria italica
Seita.5G051700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4608868-4613867 Setaria italica
Seita.5G051700 10.0kb upstream 10.0kb upstream 16242 true scaffold_5: 4592626-4608867 Setaria italica
Seita.5G051700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4592626-4602625 Setaria italica
Seita.5G051700 10.0kb downstream 10.0kb downstream 16242 true scaffold_5: 4602626-4618867 Setaria italica
Seita.5G051700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4608868-4618867 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181404 5267 Panicoideae View MSA
124587389 5269 Grass View MSA
122048656 5273 Angiosperm View MSA
121344631 5274 Embryophyte View MSA
123424475 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.227        
cufflinks 3.248        
cufflinks 5.663       High
cufflinks 3.586        
cufflinks 3.289        
cufflinks 4.405        
cufflinks 3.545        
cufflinks 5.302       High
cufflinks 3.288        
cufflinks 3.307        
cufflinks 2.826       Low
cufflinks 4.07        
cufflinks 2.898       Low
cufflinks 4.302        
cufflinks 3.688        
cufflinks 5.03       High
cufflinks 5.107       High
cufflinks 4.285        
cufflinks 3.592        
cufflinks 4.625        

0 Strain