Gene : Seita.5G055900 S. italica v2.2
Defline:  (1 of 2) 2.7.7.2 - FAD synthetase / FMN adenylyltransferase Genomic Order:  559
Name:  ? Seita.5G055900 Secondary Identifier:  ? PAC:32684899
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica RIBOSYN2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G055900 0.5kb upstream 0.5kb upstream 6978 true scaffold_5: 4998726-5005703 Setaria italica
Seita.5G055900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4998726-4999225 Setaria italica
Seita.5G055900 0.5kb downstream 0.5kb downstream 6978 true scaffold_5: 4999226-5006203 Setaria italica
Seita.5G055900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5005704-5006203 Setaria italica
Seita.5G055900 1.0kb upstream 1.0kb upstream 7478 true scaffold_5: 4998226-5005703 Setaria italica
Seita.5G055900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4998226-4999225 Setaria italica
Seita.5G055900 1.0kb downstream 1.0kb downstream 7478 true scaffold_5: 4999226-5006703 Setaria italica
Seita.5G055900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5005704-5006703 Setaria italica
Seita.5G055900 2.0kb upstream 2.0kb upstream 8478 true scaffold_5: 4997226-5005703 Setaria italica
Seita.5G055900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4997226-4999225 Setaria italica
Seita.5G055900 2.0kb downstream 2.0kb downstream 8478 true scaffold_5: 4999226-5007703 Setaria italica
Seita.5G055900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5005704-5007703 Setaria italica
Seita.5G055900 5.0kb upstream 5.0kb upstream 11478 true scaffold_5: 4994226-5005703 Setaria italica
Seita.5G055900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4994226-4999225 Setaria italica
Seita.5G055900 5.0kb downstream 5.0kb downstream 11478 true scaffold_5: 4999226-5010703 Setaria italica
Seita.5G055900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5005704-5010703 Setaria italica
Seita.5G055900 10.0kb upstream 10.0kb upstream 16478 true scaffold_5: 4989226-5005703 Setaria italica
Seita.5G055900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4989226-4999225 Setaria italica
Seita.5G055900 10.0kb downstream 10.0kb downstream 16478 true scaffold_5: 4999226-5015703 Setaria italica
Seita.5G055900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5005704-5015703 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184115 5267 Panicoideae View MSA
124580685 5269 Grass View MSA
122049798 5273 Angiosperm View MSA
121344639 5274 Embryophyte View MSA
123427825 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.997        
cufflinks 6.555       Low
cufflinks 9.169        
cufflinks 9.668        
cufflinks 8.462        
cufflinks 6.165       Low
cufflinks 7.145        
cufflinks 9.227        
cufflinks 7.922        
cufflinks 7.227        
cufflinks 7.03       Low
cufflinks 8.842        
cufflinks 7.478        
cufflinks 9.914       High
cufflinks 8.374        
cufflinks 9.579        
cufflinks 7.706        
cufflinks 12.174     High High
cufflinks 7.815        
cufflinks 8.312        

0 Strain