Gene : Seita.5G060700 S. italica v2.2
Defline:  (1 of 1) PTHR16465 - NUCLEASE-RELATED Genomic Order:  607
Name:  ? Seita.5G060700 Secondary Identifier:  ? PAC:32686343
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G060700 0.5kb upstream 0.5kb upstream 3553 true scaffold_5: 5334926-5338478 Setaria italica
Seita.5G060700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5337979-5338478 Setaria italica
Seita.5G060700 0.5kb downstream 0.5kb downstream 3553 true scaffold_5: 5334426-5337978 Setaria italica
Seita.5G060700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5334426-5334925 Setaria italica
Seita.5G060700 1.0kb upstream 1.0kb upstream 4053 true scaffold_5: 5334926-5338978 Setaria italica
Seita.5G060700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5337979-5338978 Setaria italica
Seita.5G060700 1.0kb downstream 1.0kb downstream 4053 true scaffold_5: 5333926-5337978 Setaria italica
Seita.5G060700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5333926-5334925 Setaria italica
Seita.5G060700 2.0kb upstream 2.0kb upstream 5053 true scaffold_5: 5334926-5339978 Setaria italica
Seita.5G060700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5337979-5339978 Setaria italica
Seita.5G060700 2.0kb downstream 2.0kb downstream 5053 true scaffold_5: 5332926-5337978 Setaria italica
Seita.5G060700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5332926-5334925 Setaria italica
Seita.5G060700 5.0kb upstream 5.0kb upstream 8053 true scaffold_5: 5334926-5342978 Setaria italica
Seita.5G060700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5337979-5342978 Setaria italica
Seita.5G060700 5.0kb downstream 5.0kb downstream 8053 true scaffold_5: 5329926-5337978 Setaria italica
Seita.5G060700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5329926-5334925 Setaria italica
Seita.5G060700 10.0kb upstream 10.0kb upstream 13053 true scaffold_5: 5334926-5347978 Setaria italica
Seita.5G060700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5337979-5347978 Setaria italica
Seita.5G060700 10.0kb downstream 10.0kb downstream 13053 true scaffold_5: 5324926-5337978 Setaria italica
Seita.5G060700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5324926-5334925 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177978 5267 Panicoideae View MSA
124570849 5269 Grass View MSA
122049396 5273 Angiosperm View MSA
121346346 5274 Embryophyte View MSA
123380370 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.563        
cufflinks 2.889       High
cufflinks 0.131       Low
cufflinks 0.074     Low Low
cufflinks 0.143       Low
cufflinks 2.431       High
cufflinks 1.755       High
cufflinks 1.842       High
cufflinks 2.769       High
cufflinks 1.336        
cufflinks 0.633        
cufflinks 0.48        
cufflinks 0.34        
cufflinks 0.343        
cufflinks 0.621        
cufflinks 0.457        
cufflinks 0.682        
cufflinks 0.361        
cufflinks 0.056     Low Low
cufflinks 0.598        

0 Strain