Gene : Seita.5G062900 S. italica v2.2
Defline:  (1 of 3) PTHR12001//PTHR12001:SF54 - GERANYLGERANYL PYROPHOSPHATE SYNTHASE Genomic Order:  629
Name:  ? Seita.5G062900 Secondary Identifier:  ? PAC:32684701
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5120 Setaria italica pathologic  
Sitalica PWY-5910 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G062900 0.5kb upstream 0.5kb upstream 1598 true scaffold_5: 5494986-5496583 Setaria italica
Seita.5G062900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5496084-5496583 Setaria italica
Seita.5G062900 0.5kb downstream 0.5kb downstream 1598 true scaffold_5: 5494486-5496083 Setaria italica
Seita.5G062900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5494486-5494985 Setaria italica
Seita.5G062900 1.0kb upstream 1.0kb upstream 2098 true scaffold_5: 5494986-5497083 Setaria italica
Seita.5G062900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5496084-5497083 Setaria italica
Seita.5G062900 1.0kb downstream 1.0kb downstream 2098 true scaffold_5: 5493986-5496083 Setaria italica
Seita.5G062900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5493986-5494985 Setaria italica
Seita.5G062900 2.0kb upstream 2.0kb upstream 3098 true scaffold_5: 5494986-5498083 Setaria italica
Seita.5G062900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5496084-5498083 Setaria italica
Seita.5G062900 2.0kb downstream 2.0kb downstream 3098 true scaffold_5: 5492986-5496083 Setaria italica
Seita.5G062900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5492986-5494985 Setaria italica
Seita.5G062900 5.0kb upstream 5.0kb upstream 6098 true scaffold_5: 5494986-5501083 Setaria italica
Seita.5G062900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5496084-5501083 Setaria italica
Seita.5G062900 5.0kb downstream 5.0kb downstream 6098 true scaffold_5: 5489986-5496083 Setaria italica
Seita.5G062900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5489986-5494985 Setaria italica
Seita.5G062900 10.0kb upstream 10.0kb upstream 11098 true scaffold_5: 5494986-5506083 Setaria italica
Seita.5G062900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5496084-5506083 Setaria italica
Seita.5G062900 10.0kb downstream 10.0kb downstream 11098 true scaffold_5: 5484986-5496083 Setaria italica
Seita.5G062900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5484986-5494985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189643 5267 Panicoideae View MSA
124587937 5269 Grass View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.978        
cufflinks 4.467        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.905        
cufflinks 1.216        
cufflinks 1.223        
cufflinks 2.292        
cufflinks 1.121        
cufflinks 3.249        
cufflinks 0.969        
cufflinks 3.751        
cufflinks 0.173       Low
cufflinks 4.998        
cufflinks 0.111       Low
cufflinks 1.172        
cufflinks 0.048     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.229       High

0 Strain