Gene : Seita.5G064200 S. italica v2.2
Defline:  (1 of 2) PTHR21228 - FAST LEU-RICH DOMAIN-CONTAINING Genomic Order:  642
Name:  ? Seita.5G064200 Secondary Identifier:  ? PAC:32685199
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G064200 0.5kb upstream 0.5kb upstream 3626 true scaffold_5: 5598078-5601703 Setaria italica
Seita.5G064200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5598078-5598577 Setaria italica
Seita.5G064200 0.5kb downstream 0.5kb downstream 3626 true scaffold_5: 5598578-5602203 Setaria italica
Seita.5G064200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5601704-5602203 Setaria italica
Seita.5G064200 1.0kb upstream 1.0kb upstream 4126 true scaffold_5: 5597578-5601703 Setaria italica
Seita.5G064200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5597578-5598577 Setaria italica
Seita.5G064200 1.0kb downstream 1.0kb downstream 4126 true scaffold_5: 5598578-5602703 Setaria italica
Seita.5G064200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5601704-5602703 Setaria italica
Seita.5G064200 2.0kb upstream 2.0kb upstream 5126 true scaffold_5: 5596578-5601703 Setaria italica
Seita.5G064200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5596578-5598577 Setaria italica
Seita.5G064200 2.0kb downstream 2.0kb downstream 5126 true scaffold_5: 5598578-5603703 Setaria italica
Seita.5G064200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5601704-5603703 Setaria italica
Seita.5G064200 5.0kb upstream 5.0kb upstream 8126 true scaffold_5: 5593578-5601703 Setaria italica
Seita.5G064200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5593578-5598577 Setaria italica
Seita.5G064200 5.0kb downstream 5.0kb downstream 8126 true scaffold_5: 5598578-5606703 Setaria italica
Seita.5G064200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5601704-5606703 Setaria italica
Seita.5G064200 10.0kb upstream 10.0kb upstream 13126 true scaffold_5: 5588578-5601703 Setaria italica
Seita.5G064200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5588578-5598577 Setaria italica
Seita.5G064200 10.0kb downstream 10.0kb downstream 13126 true scaffold_5: 5598578-5611703 Setaria italica
Seita.5G064200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5601704-5611703 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041465 5273 Angiosperm View MSA
122182771 5267 Panicoideae View MSA
124578289 5269 Grass View MSA
121348918 5274 Embryophyte View MSA
123427594 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.719        
cufflinks 5.179        
cufflinks 4.421        
cufflinks 2.354        
cufflinks 6.145        
cufflinks 4.875        
cufflinks 8.697       High
cufflinks 9.411       High
cufflinks 15.755     High High
cufflinks 2.602        
cufflinks 3.992        
cufflinks 1.585       Low
cufflinks 1.626       Low
cufflinks 5.592        
cufflinks 1.844       Low
cufflinks 7.292        
cufflinks 1.45       Low
cufflinks 6.614        
cufflinks 3.67        
cufflinks 1.621       Low

0 Strain