Gene : Seita.5G064100 S. italica v2.2
Defline:  (1 of 1) PTHR22835//PTHR22835:SF207 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Genomic Order:  641
Name:  ? Seita.5G064100 Secondary Identifier:  ? PAC:32682523
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPAS-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G064100 0.5kb upstream 0.5kb upstream 2279 true scaffold_5: 5591063-5593341 Setaria italica
Seita.5G064100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5591063-5591562 Setaria italica
Seita.5G064100 0.5kb downstream 0.5kb downstream 2279 true scaffold_5: 5591563-5593841 Setaria italica
Seita.5G064100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5593342-5593841 Setaria italica
Seita.5G064100 1.0kb upstream 1.0kb upstream 2779 true scaffold_5: 5590563-5593341 Setaria italica
Seita.5G064100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5590563-5591562 Setaria italica
Seita.5G064100 1.0kb downstream 1.0kb downstream 2779 true scaffold_5: 5591563-5594341 Setaria italica
Seita.5G064100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5593342-5594341 Setaria italica
Seita.5G064100 2.0kb upstream 2.0kb upstream 3779 true scaffold_5: 5589563-5593341 Setaria italica
Seita.5G064100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5589563-5591562 Setaria italica
Seita.5G064100 2.0kb downstream 2.0kb downstream 3779 true scaffold_5: 5591563-5595341 Setaria italica
Seita.5G064100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5593342-5595341 Setaria italica
Seita.5G064100 5.0kb upstream 5.0kb upstream 6779 true scaffold_5: 5586563-5593341 Setaria italica
Seita.5G064100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5586563-5591562 Setaria italica
Seita.5G064100 5.0kb downstream 5.0kb downstream 6779 true scaffold_5: 5591563-5598341 Setaria italica
Seita.5G064100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5593342-5598341 Setaria italica
Seita.5G064100 10.0kb upstream 10.0kb upstream 11779 true scaffold_5: 5581563-5593341 Setaria italica
Seita.5G064100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5581563-5591562 Setaria italica
Seita.5G064100 10.0kb downstream 10.0kb downstream 11779 true scaffold_5: 5591563-5603341 Setaria italica
Seita.5G064100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5593342-5603341 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180001 5267 Panicoideae View MSA
124585315 5269 Grass View MSA
122042489 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.056        
cufflinks 3.189       High
cufflinks 0.02     Low Low
cufflinks 0.029     Low  
cufflinks 0.019     Low Low
cufflinks 1.409        
cufflinks 1.727        
cufflinks 2.124       High
cufflinks 2.244       High
cufflinks 1.681        
cufflinks 1.027        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low Low
cufflinks 0.044     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.316        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.06     Low  
cufflinks 0.032     Low  
cufflinks 0.01     Low Low

0 Strain