Gene : Seita.5G065000 S. italica v2.2
Defline:  (1 of 2) PTHR11205:SF24 - 40S RIBOSOMAL PROTEIN S5-1-RELATED Genomic Order:  650
Name:  ? Seita.5G065000 Secondary Identifier:  ? PAC:32682096
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G065000 0.5kb upstream 0.5kb upstream 2074 true scaffold_5: 5646691-5648764 Setaria italica
Seita.5G065000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5646691-5647190 Setaria italica
Seita.5G065000 0.5kb downstream 0.5kb downstream 2074 true scaffold_5: 5647191-5649264 Setaria italica
Seita.5G065000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5648765-5649264 Setaria italica
Seita.5G065000 1.0kb upstream 1.0kb upstream 2574 true scaffold_5: 5646191-5648764 Setaria italica
Seita.5G065000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5646191-5647190 Setaria italica
Seita.5G065000 1.0kb downstream 1.0kb downstream 2574 true scaffold_5: 5647191-5649764 Setaria italica
Seita.5G065000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5648765-5649764 Setaria italica
Seita.5G065000 2.0kb upstream 2.0kb upstream 3574 true scaffold_5: 5645191-5648764 Setaria italica
Seita.5G065000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5645191-5647190 Setaria italica
Seita.5G065000 2.0kb downstream 2.0kb downstream 3574 true scaffold_5: 5647191-5650764 Setaria italica
Seita.5G065000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5648765-5650764 Setaria italica
Seita.5G065000 5.0kb upstream 5.0kb upstream 6574 true scaffold_5: 5642191-5648764 Setaria italica
Seita.5G065000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5642191-5647190 Setaria italica
Seita.5G065000 5.0kb downstream 5.0kb downstream 6574 true scaffold_5: 5647191-5653764 Setaria italica
Seita.5G065000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5648765-5653764 Setaria italica
Seita.5G065000 10.0kb upstream 10.0kb upstream 11574 true scaffold_5: 5637191-5648764 Setaria italica
Seita.5G065000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5637191-5647190 Setaria italica
Seita.5G065000 10.0kb downstream 10.0kb downstream 11574 true scaffold_5: 5647191-5658764 Setaria italica
Seita.5G065000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5648765-5658764 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179826 5267 Panicoideae View MSA
124586912 5269 Grass View MSA
122048966 5273 Angiosperm View MSA
121345669 5274 Embryophyte View MSA
123423957 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 112.919     High  
cufflinks 160.316     High  
cufflinks 24.614     High Low
cufflinks 20.304     High Low
cufflinks 43.735     High Low
cufflinks 166.436     High  
cufflinks 111.378     High  
cufflinks 246.373     High High
cufflinks 250.857     High High
cufflinks 295.623     High High
cufflinks 145.126     High  
cufflinks 138.508     High  
cufflinks 125.809     High  
cufflinks 53.449     High  
cufflinks 151.46     High  
cufflinks 50.351     High  
cufflinks 207.091     High  
cufflinks 43.063     High Low
cufflinks 45.475     High  
cufflinks 212.379     High  

0 Strain