Gene : Seita.5G068800 S. italica v2.2
Genomic Order:  688 Name:  ? Seita.5G068800
Secondary Identifier:  ? PAC:32680825
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G068800 0.5kb upstream 0.5kb upstream 6299 true scaffold_5: 5872333-5878631 Setaria italica
Seita.5G068800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5872333-5872832 Setaria italica
Seita.5G068800 0.5kb downstream 0.5kb downstream 6299 true scaffold_5: 5872833-5879131 Setaria italica
Seita.5G068800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5878632-5879131 Setaria italica
Seita.5G068800 1.0kb upstream 1.0kb upstream 6799 true scaffold_5: 5871833-5878631 Setaria italica
Seita.5G068800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5871833-5872832 Setaria italica
Seita.5G068800 1.0kb downstream 1.0kb downstream 6799 true scaffold_5: 5872833-5879631 Setaria italica
Seita.5G068800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5878632-5879631 Setaria italica
Seita.5G068800 2.0kb upstream 2.0kb upstream 7799 true scaffold_5: 5870833-5878631 Setaria italica
Seita.5G068800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5870833-5872832 Setaria italica
Seita.5G068800 2.0kb downstream 2.0kb downstream 7799 true scaffold_5: 5872833-5880631 Setaria italica
Seita.5G068800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5878632-5880631 Setaria italica
Seita.5G068800 5.0kb upstream 5.0kb upstream 10799 true scaffold_5: 5867833-5878631 Setaria italica
Seita.5G068800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5867833-5872832 Setaria italica
Seita.5G068800 5.0kb downstream 5.0kb downstream 10799 true scaffold_5: 5872833-5883631 Setaria italica
Seita.5G068800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5878632-5883631 Setaria italica
Seita.5G068800 10.0kb upstream 10.0kb upstream 15799 true scaffold_5: 5862833-5878631 Setaria italica
Seita.5G068800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5862833-5872832 Setaria italica
Seita.5G068800 10.0kb downstream 10.0kb downstream 15799 true scaffold_5: 5872833-5888631 Setaria italica
Seita.5G068800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5878632-5888631 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026491 5273 Angiosperm View MSA
122186297 5267 Panicoideae View MSA
124581024 5269 Grass View MSA
121346018 5274 Embryophyte View MSA
123380308 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.318        
cufflinks 0.636       High
cufflinks 0.375        
cufflinks 0.3        
cufflinks 0.127       Low
cufflinks 0.488        
cufflinks 0.468        
cufflinks 0.507        
cufflinks 0.311        
cufflinks 0.349        
cufflinks 0.449        
cufflinks 0.476        
cufflinks 0.628       High
cufflinks 0.315        
cufflinks 0.454        
cufflinks 0.142       Low
cufflinks 0.539        
cufflinks 0.218       Low
cufflinks 0.278        
cufflinks 0.691       High

0 Strain