Gene : Seita.5G069200 S. italica v2.2
Genomic Order:  692 Name:  ? Seita.5G069200
Secondary Identifier:  ? PAC:32682484
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G069200 0.5kb upstream 0.5kb upstream 2451 true scaffold_5: 5915220-5917670 Setaria italica
Seita.5G069200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5915220-5915719 Setaria italica
Seita.5G069200 0.5kb downstream 0.5kb downstream 2451 true scaffold_5: 5915720-5918170 Setaria italica
Seita.5G069200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5917671-5918170 Setaria italica
Seita.5G069200 1.0kb upstream 1.0kb upstream 2951 true scaffold_5: 5914720-5917670 Setaria italica
Seita.5G069200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5914720-5915719 Setaria italica
Seita.5G069200 1.0kb downstream 1.0kb downstream 2951 true scaffold_5: 5915720-5918670 Setaria italica
Seita.5G069200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5917671-5918670 Setaria italica
Seita.5G069200 2.0kb upstream 2.0kb upstream 3951 true scaffold_5: 5913720-5917670 Setaria italica
Seita.5G069200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5913720-5915719 Setaria italica
Seita.5G069200 2.0kb downstream 2.0kb downstream 3951 true scaffold_5: 5915720-5919670 Setaria italica
Seita.5G069200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5917671-5919670 Setaria italica
Seita.5G069200 5.0kb upstream 5.0kb upstream 6951 true scaffold_5: 5910720-5917670 Setaria italica
Seita.5G069200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5910720-5915719 Setaria italica
Seita.5G069200 5.0kb downstream 5.0kb downstream 6951 true scaffold_5: 5915720-5922670 Setaria italica
Seita.5G069200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5917671-5922670 Setaria italica
Seita.5G069200 10.0kb upstream 10.0kb upstream 11951 true scaffold_5: 5905720-5917670 Setaria italica
Seita.5G069200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5905720-5915719 Setaria italica
Seita.5G069200 10.0kb downstream 10.0kb downstream 11951 true scaffold_5: 5915720-5927670 Setaria italica
Seita.5G069200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5917671-5927670 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186899 5267 Panicoideae View MSA
124587071 5269 Grass View MSA
122046156 5273 Angiosperm View MSA
121344204 5274 Embryophyte View MSA
123425750 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.708        
cufflinks 4.302       High
cufflinks 2.282        
cufflinks 1.723        
cufflinks 0.896       Low
cufflinks 3.63       High
cufflinks 1.357        
cufflinks 2.149        
cufflinks 1.905        
cufflinks 4.159       High
cufflinks 1.804        
cufflinks 2.658        
cufflinks 2.038        
cufflinks 4.757       High
cufflinks 2.593        
cufflinks 1.458        
cufflinks 3.925       High
cufflinks 1.116       Low
cufflinks 1.128       Low
cufflinks 3.23        

0 Strain