Gene : Seita.5G067300 S. italica v2.2
Defline:  (1 of 1) PTHR31956:SF2 - NON-SPECIFIC PHOSPHOLIPASE C6 Genomic Order:  673
Name:  ? Seita.5G067300 Secondary Identifier:  ? PAC:32681688
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G067300 0.5kb upstream 0.5kb upstream 3073 true scaffold_5: 5797902-5800974 Setaria italica
Seita.5G067300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5800475-5800974 Setaria italica
Seita.5G067300 0.5kb downstream 0.5kb downstream 3073 true scaffold_5: 5797402-5800474 Setaria italica
Seita.5G067300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5797402-5797901 Setaria italica
Seita.5G067300 1.0kb upstream 1.0kb upstream 3573 true scaffold_5: 5797902-5801474 Setaria italica
Seita.5G067300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5800475-5801474 Setaria italica
Seita.5G067300 1.0kb downstream 1.0kb downstream 3573 true scaffold_5: 5796902-5800474 Setaria italica
Seita.5G067300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5796902-5797901 Setaria italica
Seita.5G067300 2.0kb upstream 2.0kb upstream 4573 true scaffold_5: 5797902-5802474 Setaria italica
Seita.5G067300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5800475-5802474 Setaria italica
Seita.5G067300 2.0kb downstream 2.0kb downstream 4573 true scaffold_5: 5795902-5800474 Setaria italica
Seita.5G067300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5795902-5797901 Setaria italica
Seita.5G067300 5.0kb upstream 5.0kb upstream 7573 true scaffold_5: 5797902-5805474 Setaria italica
Seita.5G067300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5800475-5805474 Setaria italica
Seita.5G067300 5.0kb downstream 5.0kb downstream 7573 true scaffold_5: 5792902-5800474 Setaria italica
Seita.5G067300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5792902-5797901 Setaria italica
Seita.5G067300 10.0kb upstream 10.0kb upstream 12573 true scaffold_5: 5797902-5810474 Setaria italica
Seita.5G067300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5800475-5810474 Setaria italica
Seita.5G067300 10.0kb downstream 10.0kb downstream 12573 true scaffold_5: 5787902-5800474 Setaria italica
Seita.5G067300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5787902-5797901 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184636 5267 Panicoideae View MSA
124577445 5269 Grass View MSA
122046381 5273 Angiosperm View MSA
121310596 5274 Embryophyte View MSA
123348041 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.622        
cufflinks 3.453        
cufflinks 3.12        
cufflinks 4.771        
cufflinks 7.5       High
cufflinks 3.858        
cufflinks 1.141        
cufflinks 6.626       High
cufflinks 3.945        
cufflinks 5.868       High
cufflinks 2.469        
cufflinks 0.578       Low
cufflinks 0.502       Low
cufflinks 2.86        
cufflinks 0.407       Low
cufflinks 1.199        
cufflinks 0.475       Low
cufflinks 0.817        
cufflinks 2.445        
cufflinks 1.146        

0 Strain