Gene : Seita.5G074800 S. italica v2.2
Defline:  (1 of 1) PTHR13586//PTHR13586:SF4 - SCD6 PROTEIN-RELATED Genomic Order:  748
Name:  ? Seita.5G074800 Secondary Identifier:  ? PAC:32685898
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G074800 0.5kb upstream 0.5kb upstream 5994 true scaffold_5: 6450477-6456470 Setaria italica
Seita.5G074800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6450477-6450976 Setaria italica
Seita.5G074800 0.5kb downstream 0.5kb downstream 5994 true scaffold_5: 6450977-6456970 Setaria italica
Seita.5G074800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6456471-6456970 Setaria italica
Seita.5G074800 1.0kb upstream 1.0kb upstream 6494 true scaffold_5: 6449977-6456470 Setaria italica
Seita.5G074800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6449977-6450976 Setaria italica
Seita.5G074800 1.0kb downstream 1.0kb downstream 6494 true scaffold_5: 6450977-6457470 Setaria italica
Seita.5G074800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6456471-6457470 Setaria italica
Seita.5G074800 2.0kb upstream 2.0kb upstream 7494 true scaffold_5: 6448977-6456470 Setaria italica
Seita.5G074800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6448977-6450976 Setaria italica
Seita.5G074800 2.0kb downstream 2.0kb downstream 7494 true scaffold_5: 6450977-6458470 Setaria italica
Seita.5G074800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6456471-6458470 Setaria italica
Seita.5G074800 5.0kb upstream 5.0kb upstream 10494 true scaffold_5: 6445977-6456470 Setaria italica
Seita.5G074800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6445977-6450976 Setaria italica
Seita.5G074800 5.0kb downstream 5.0kb downstream 10494 true scaffold_5: 6450977-6461470 Setaria italica
Seita.5G074800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6456471-6461470 Setaria italica
Seita.5G074800 10.0kb upstream 10.0kb upstream 15494 true scaffold_5: 6440977-6456470 Setaria italica
Seita.5G074800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6440977-6450976 Setaria italica
Seita.5G074800 10.0kb downstream 10.0kb downstream 15494 true scaffold_5: 6450977-6466470 Setaria italica
Seita.5G074800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6456471-6466470 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185744 5267 Panicoideae View MSA
124576566 5269 Grass View MSA
122051702 5273 Angiosperm View MSA
121348013 5274 Embryophyte View MSA
123428687 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.122     High  
cufflinks 40.686     High  
cufflinks 28.541     High Low
cufflinks 27.091     High Low
cufflinks 29.0     High Low
cufflinks 41.048     High  
cufflinks 34.951     High  
cufflinks 39.349     High  
cufflinks 41.733     High  
cufflinks 39.179     High  
cufflinks 41.705     High  
cufflinks 55.896     High High
cufflinks 43.061     High  
cufflinks 22.391     High Low
cufflinks 41.247     High  
cufflinks 32.708     High  
cufflinks 55.873     High High
cufflinks 49.321     High  
cufflinks 25.716     High Low
cufflinks 51.764     High High

0 Strain