Gene : Seita.5G078900 S. italica v2.2
Genomic Order:  789 Name:  ? Seita.5G078900
Secondary Identifier:  ? PAC:32684996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G078900 0.5kb upstream 0.5kb upstream 4333 true scaffold_5: 6732832-6737164 Setaria italica
Seita.5G078900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6736665-6737164 Setaria italica
Seita.5G078900 0.5kb downstream 0.5kb downstream 4333 true scaffold_5: 6732332-6736664 Setaria italica
Seita.5G078900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6732332-6732831 Setaria italica
Seita.5G078900 1.0kb upstream 1.0kb upstream 4833 true scaffold_5: 6732832-6737664 Setaria italica
Seita.5G078900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6736665-6737664 Setaria italica
Seita.5G078900 1.0kb downstream 1.0kb downstream 4833 true scaffold_5: 6731832-6736664 Setaria italica
Seita.5G078900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6731832-6732831 Setaria italica
Seita.5G078900 2.0kb upstream 2.0kb upstream 5833 true scaffold_5: 6732832-6738664 Setaria italica
Seita.5G078900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6736665-6738664 Setaria italica
Seita.5G078900 2.0kb downstream 2.0kb downstream 5833 true scaffold_5: 6730832-6736664 Setaria italica
Seita.5G078900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6730832-6732831 Setaria italica
Seita.5G078900 5.0kb upstream 5.0kb upstream 8833 true scaffold_5: 6732832-6741664 Setaria italica
Seita.5G078900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6736665-6741664 Setaria italica
Seita.5G078900 5.0kb downstream 5.0kb downstream 8833 true scaffold_5: 6727832-6736664 Setaria italica
Seita.5G078900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6727832-6732831 Setaria italica
Seita.5G078900 10.0kb upstream 10.0kb upstream 13833 true scaffold_5: 6732832-6746664 Setaria italica
Seita.5G078900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6736665-6746664 Setaria italica
Seita.5G078900 10.0kb downstream 10.0kb downstream 13833 true scaffold_5: 6722832-6736664 Setaria italica
Seita.5G078900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6722832-6732831 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197356 5267 Panicoideae View MSA
124586929 5269 Grass View MSA
122043183 5273 Angiosperm View MSA
121310085 5274 Embryophyte View MSA
123347672 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.634        
cufflinks 0.693        
cufflinks 0.378        
cufflinks 0.274       Low
cufflinks 0.191       Low
cufflinks 0.763        
cufflinks 0.489        
cufflinks 0.837       High
cufflinks 0.328        
cufflinks 1.251       High
cufflinks 0.644        
cufflinks 0.67        
cufflinks 0.396        
cufflinks 0.292       Low
cufflinks 0.514        
cufflinks 0.352        
cufflinks 0.899       High
cufflinks 0.737        
cufflinks 0.241       Low
cufflinks 0.637        

0 Strain