Gene : Seita.5G076100 S. italica v2.2
Defline:  (1 of 1) PTHR23315:SF65 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  761
Name:  ? Seita.5G076100 Secondary Identifier:  ? PAC:32683081
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G076100 0.5kb upstream 0.5kb upstream 4205 true scaffold_5: 6522748-6526952 Setaria italica
Seita.5G076100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6526453-6526952 Setaria italica
Seita.5G076100 0.5kb downstream 0.5kb downstream 4205 true scaffold_5: 6522248-6526452 Setaria italica
Seita.5G076100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6522248-6522747 Setaria italica
Seita.5G076100 1.0kb upstream 1.0kb upstream 4705 true scaffold_5: 6522748-6527452 Setaria italica
Seita.5G076100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6526453-6527452 Setaria italica
Seita.5G076100 1.0kb downstream 1.0kb downstream 4705 true scaffold_5: 6521748-6526452 Setaria italica
Seita.5G076100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6521748-6522747 Setaria italica
Seita.5G076100 2.0kb upstream 2.0kb upstream 5705 true scaffold_5: 6522748-6528452 Setaria italica
Seita.5G076100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6526453-6528452 Setaria italica
Seita.5G076100 2.0kb downstream 2.0kb downstream 5705 true scaffold_5: 6520748-6526452 Setaria italica
Seita.5G076100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6520748-6522747 Setaria italica
Seita.5G076100 5.0kb upstream 5.0kb upstream 8705 true scaffold_5: 6522748-6531452 Setaria italica
Seita.5G076100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6526453-6531452 Setaria italica
Seita.5G076100 5.0kb downstream 5.0kb downstream 8705 true scaffold_5: 6517748-6526452 Setaria italica
Seita.5G076100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6517748-6522747 Setaria italica
Seita.5G076100 10.0kb upstream 10.0kb upstream 13705 true scaffold_5: 6522748-6536452 Setaria italica
Seita.5G076100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6526453-6536452 Setaria italica
Seita.5G076100 10.0kb downstream 10.0kb downstream 13705 true scaffold_5: 6512748-6526452 Setaria italica
Seita.5G076100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6512748-6522747 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198166 5267 Panicoideae View MSA
124580841 5269 Grass View MSA
122044762 5273 Angiosperm View MSA
121310337 5274 Embryophyte View MSA
123347849 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.305       Low
cufflinks 5.923        
cufflinks 9.469        
cufflinks 11.088     High  
cufflinks 9.163        
cufflinks 7.897        
cufflinks 3.849       Low
cufflinks 11.486        
cufflinks 6.945        
cufflinks 7.738        
cufflinks 4.86       Low
cufflinks 16.308     High High
cufflinks 17.891     High High
cufflinks 11.528        
cufflinks 9.339        
cufflinks 3.52       Low
cufflinks 16.077     High High
cufflinks 8.42        
cufflinks 9.458        
cufflinks 8.624        

0 Strain