Gene : Seita.5G165700 S. italica v2.2
Defline:  (1 of 4) PTHR24220:SF508 - ABC TRANSPORTER I FAMILY MEMBER 1 Genomic Order:  1657
Name:  ? Seita.5G165700 Secondary Identifier:  ? PAC:32681435
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G165700 0.5kb upstream 0.5kb upstream 4551 true scaffold_5: 16270974-16275524 Setaria italica
Seita.5G165700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 16270974-16271473 Setaria italica
Seita.5G165700 0.5kb downstream 0.5kb downstream 4551 true scaffold_5: 16271474-16276024 Setaria italica
Seita.5G165700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 16275525-16276024 Setaria italica
Seita.5G165700 1.0kb upstream 1.0kb upstream 5051 true scaffold_5: 16270474-16275524 Setaria italica
Seita.5G165700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 16270474-16271473 Setaria italica
Seita.5G165700 1.0kb downstream 1.0kb downstream 5051 true scaffold_5: 16271474-16276524 Setaria italica
Seita.5G165700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 16275525-16276524 Setaria italica
Seita.5G165700 2.0kb upstream 2.0kb upstream 6051 true scaffold_5: 16269474-16275524 Setaria italica
Seita.5G165700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 16269474-16271473 Setaria italica
Seita.5G165700 2.0kb downstream 2.0kb downstream 6051 true scaffold_5: 16271474-16277524 Setaria italica
Seita.5G165700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 16275525-16277524 Setaria italica
Seita.5G165700 5.0kb upstream 5.0kb upstream 9051 true scaffold_5: 16266474-16275524 Setaria italica
Seita.5G165700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 16266474-16271473 Setaria italica
Seita.5G165700 5.0kb downstream 5.0kb downstream 9051 true scaffold_5: 16271474-16280524 Setaria italica
Seita.5G165700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 16275525-16280524 Setaria italica
Seita.5G165700 10.0kb upstream 10.0kb upstream 14051 true scaffold_5: 16261474-16275524 Setaria italica
Seita.5G165700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 16261474-16271473 Setaria italica
Seita.5G165700 10.0kb downstream 10.0kb downstream 14051 true scaffold_5: 16271474-16285524 Setaria italica
Seita.5G165700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 16275525-16285524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040954 5273 Angiosperm View MSA
122176760 5267 Panicoideae View MSA
124569129 5269 Grass View MSA
121344405 5274 Embryophyte View MSA
123380037 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.998       High
cufflinks 3.35        
cufflinks 2.851        
cufflinks 2.496       Low
cufflinks 2.539        
cufflinks 3.473        
cufflinks 3.131        
cufflinks 2.873        
cufflinks 2.307       Low
cufflinks 4.539       High
cufflinks 3.18        
cufflinks 2.774        
cufflinks 2.994        
cufflinks 2.674        
cufflinks 3.223        
cufflinks 4.191       High
cufflinks 3.138        
cufflinks 4.897       High
cufflinks 2.052       Low
cufflinks 3.371        

0 Strain