Gene : Seita.5G166900 S. italica v2.2
Defline:  (1 of 2) PTHR10168//PTHR10168:SF92 - GLUTAREDOXIN Genomic Order:  1669
Name:  ? Seita.5G166900 Secondary Identifier:  ? PAC:32683784
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica THIOREDOX-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G166900 0.5kb upstream 0.5kb upstream 1208 true scaffold_5: 16633004-16634211 Setaria italica
Seita.5G166900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 16633004-16633503 Setaria italica
Seita.5G166900 0.5kb downstream 0.5kb downstream 1208 true scaffold_5: 16633504-16634711 Setaria italica
Seita.5G166900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 16634212-16634711 Setaria italica
Seita.5G166900 1.0kb upstream 1.0kb upstream 1708 true scaffold_5: 16632504-16634211 Setaria italica
Seita.5G166900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 16632504-16633503 Setaria italica
Seita.5G166900 1.0kb downstream 1.0kb downstream 1708 true scaffold_5: 16633504-16635211 Setaria italica
Seita.5G166900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 16634212-16635211 Setaria italica
Seita.5G166900 2.0kb upstream 2.0kb upstream 2708 true scaffold_5: 16631504-16634211 Setaria italica
Seita.5G166900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 16631504-16633503 Setaria italica
Seita.5G166900 2.0kb downstream 2.0kb downstream 2708 true scaffold_5: 16633504-16636211 Setaria italica
Seita.5G166900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 16634212-16636211 Setaria italica
Seita.5G166900 5.0kb upstream 5.0kb upstream 5708 true scaffold_5: 16628504-16634211 Setaria italica
Seita.5G166900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 16628504-16633503 Setaria italica
Seita.5G166900 5.0kb downstream 5.0kb downstream 5708 true scaffold_5: 16633504-16639211 Setaria italica
Seita.5G166900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 16634212-16639211 Setaria italica
Seita.5G166900 10.0kb upstream 10.0kb upstream 10708 true scaffold_5: 16623504-16634211 Setaria italica
Seita.5G166900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 16623504-16633503 Setaria italica
Seita.5G166900 10.0kb downstream 10.0kb downstream 10708 true scaffold_5: 16633504-16644211 Setaria italica
Seita.5G166900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 16634212-16644211 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028026 5273 Angiosperm View MSA
122189095 5267 Panicoideae View MSA
124466008 5269 Grass View MSA
121297578 5274 Embryophyte View MSA
123335620 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.014        
cufflinks 0.025     Low Low
cufflinks 81.668     High High
cufflinks 103.107     High High
cufflinks 33.63     High  
cufflinks 0.104     Low Low
cufflinks 5.852        
cufflinks 20.263     High  
cufflinks 7.536        
cufflinks 1.667        
cufflinks 2.572        
cufflinks 0.386        
cufflinks 0.095     Low Low
cufflinks 18.238     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.732        
cufflinks 0.116     Low Low
cufflinks 19.008     High  
cufflinks 69.323     High High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain