Gene : Seita.5G172300 S. italica v2.2
Defline:  (1 of 1) PTHR21089//PTHR21089:SF11 - SHIKIMATE DEHYDROGENASE Genomic Order:  1723
Name:  ? Seita.5G172300 Secondary Identifier:  ? PAC:32686323
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARO-PWY Setaria italica pathologic  
Sitalica PWY-6163 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G172300 0.5kb upstream 0.5kb upstream 15369 true scaffold_5: 17956980-17972348 Setaria italica
Seita.5G172300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 17956980-17957479 Setaria italica
Seita.5G172300 0.5kb downstream 0.5kb downstream 15369 true scaffold_5: 17957480-17972848 Setaria italica
Seita.5G172300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 17972349-17972848 Setaria italica
Seita.5G172300 1.0kb upstream 1.0kb upstream 15869 true scaffold_5: 17956480-17972348 Setaria italica
Seita.5G172300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 17956480-17957479 Setaria italica
Seita.5G172300 1.0kb downstream 1.0kb downstream 15869 true scaffold_5: 17957480-17973348 Setaria italica
Seita.5G172300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 17972349-17973348 Setaria italica
Seita.5G172300 2.0kb upstream 2.0kb upstream 16869 true scaffold_5: 17955480-17972348 Setaria italica
Seita.5G172300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 17955480-17957479 Setaria italica
Seita.5G172300 2.0kb downstream 2.0kb downstream 16869 true scaffold_5: 17957480-17974348 Setaria italica
Seita.5G172300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 17972349-17974348 Setaria italica
Seita.5G172300 5.0kb upstream 5.0kb upstream 19869 true scaffold_5: 17952480-17972348 Setaria italica
Seita.5G172300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 17952480-17957479 Setaria italica
Seita.5G172300 5.0kb downstream 5.0kb downstream 19869 true scaffold_5: 17957480-17977348 Setaria italica
Seita.5G172300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 17972349-17977348 Setaria italica
Seita.5G172300 10.0kb upstream 10.0kb upstream 24869 true scaffold_5: 17947480-17972348 Setaria italica
Seita.5G172300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 17947480-17957479 Setaria italica
Seita.5G172300 10.0kb downstream 10.0kb downstream 24869 true scaffold_5: 17957480-17982348 Setaria italica
Seita.5G172300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 17972349-17982348 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189124 5267 Panicoideae View MSA
124570353 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.555        
cufflinks 5.654        
cufflinks 1.882       Low
cufflinks 2.152       Low
cufflinks 2.628        
cufflinks 5.377        
cufflinks 3.02        
cufflinks 5.194        
cufflinks 4.597        
cufflinks 3.614        
cufflinks 6.974        
cufflinks 7.622        
cufflinks 7.374        
cufflinks 1.3       Low
cufflinks 7.257        
cufflinks 2.545        
cufflinks 8.155       High
cufflinks 5.944        
cufflinks 1.433       Low
cufflinks 8.801       High

0 Strain