Gene : Seita.5G172700 S. italica v2.2
Defline:  (1 of 1) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Genomic Order:  1727
Name:  ? Seita.5G172700 Secondary Identifier:  ? PAC:32682577
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G172700 0.5kb upstream 0.5kb upstream 3358 true scaffold_5: 18058306-18061663 Setaria italica
Seita.5G172700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 18061164-18061663 Setaria italica
Seita.5G172700 0.5kb downstream 0.5kb downstream 3358 true scaffold_5: 18057806-18061163 Setaria italica
Seita.5G172700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 18057806-18058305 Setaria italica
Seita.5G172700 1.0kb upstream 1.0kb upstream 3858 true scaffold_5: 18058306-18062163 Setaria italica
Seita.5G172700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 18061164-18062163 Setaria italica
Seita.5G172700 1.0kb downstream 1.0kb downstream 3858 true scaffold_5: 18057306-18061163 Setaria italica
Seita.5G172700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 18057306-18058305 Setaria italica
Seita.5G172700 2.0kb upstream 2.0kb upstream 4858 true scaffold_5: 18058306-18063163 Setaria italica
Seita.5G172700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 18061164-18063163 Setaria italica
Seita.5G172700 2.0kb downstream 2.0kb downstream 4858 true scaffold_5: 18056306-18061163 Setaria italica
Seita.5G172700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 18056306-18058305 Setaria italica
Seita.5G172700 5.0kb upstream 5.0kb upstream 7858 true scaffold_5: 18058306-18066163 Setaria italica
Seita.5G172700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 18061164-18066163 Setaria italica
Seita.5G172700 5.0kb downstream 5.0kb downstream 7858 true scaffold_5: 18053306-18061163 Setaria italica
Seita.5G172700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 18053306-18058305 Setaria italica
Seita.5G172700 10.0kb upstream 10.0kb upstream 12858 true scaffold_5: 18058306-18071163 Setaria italica
Seita.5G172700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 18061164-18071163 Setaria italica
Seita.5G172700 10.0kb downstream 10.0kb downstream 12858 true scaffold_5: 18048306-18061163 Setaria italica
Seita.5G172700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 18048306-18058305 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181704 5267 Panicoideae View MSA
124578046 5269 Grass View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.311     High  
cufflinks 55.055     High  
cufflinks 225.708     High  
cufflinks 377.489     High  
cufflinks 472.677     High  
cufflinks 47.763     High  
cufflinks 263.517     High  
cufflinks 402.192     High  
cufflinks 259.492     High  
cufflinks 19.242     High  
cufflinks 10.695        
cufflinks 0.129     Low Low
cufflinks 1.394        
cufflinks 113.571     High  
cufflinks 0.124       Low
cufflinks 257.213     High  
cufflinks 0.071     Low Low
cufflinks 39.657     High  
cufflinks 261.656     High  
cufflinks 0.007     Low Low

0 Strain