Gene : Seita.5G174400 S. italica v2.2
Defline:  (1 of 1) PTHR10026:SF13 - CYCLIN-L1-RELATED Genomic Order:  1744
Name:  ? Seita.5G174400 Secondary Identifier:  ? PAC:32684216
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G174400 0.5kb upstream 0.5kb upstream 4909 true scaffold_5: 18664516-18669424 Setaria italica
Seita.5G174400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 18664516-18665015 Setaria italica
Seita.5G174400 0.5kb downstream 0.5kb downstream 4909 true scaffold_5: 18665016-18669924 Setaria italica
Seita.5G174400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 18669425-18669924 Setaria italica
Seita.5G174400 1.0kb upstream 1.0kb upstream 5409 true scaffold_5: 18664016-18669424 Setaria italica
Seita.5G174400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 18664016-18665015 Setaria italica
Seita.5G174400 1.0kb downstream 1.0kb downstream 5409 true scaffold_5: 18665016-18670424 Setaria italica
Seita.5G174400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 18669425-18670424 Setaria italica
Seita.5G174400 2.0kb upstream 2.0kb upstream 6409 true scaffold_5: 18663016-18669424 Setaria italica
Seita.5G174400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 18663016-18665015 Setaria italica
Seita.5G174400 2.0kb downstream 2.0kb downstream 6409 true scaffold_5: 18665016-18671424 Setaria italica
Seita.5G174400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 18669425-18671424 Setaria italica
Seita.5G174400 5.0kb upstream 5.0kb upstream 9409 true scaffold_5: 18660016-18669424 Setaria italica
Seita.5G174400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 18660016-18665015 Setaria italica
Seita.5G174400 5.0kb downstream 5.0kb downstream 9409 true scaffold_5: 18665016-18674424 Setaria italica
Seita.5G174400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 18669425-18674424 Setaria italica
Seita.5G174400 10.0kb upstream 10.0kb upstream 14409 true scaffold_5: 18655016-18669424 Setaria italica
Seita.5G174400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 18655016-18665015 Setaria italica
Seita.5G174400 10.0kb downstream 10.0kb downstream 14409 true scaffold_5: 18665016-18679424 Setaria italica
Seita.5G174400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 18669425-18679424 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181407 5267 Panicoideae View MSA
124574558 5269 Grass View MSA
122045443 5273 Angiosperm View MSA
123429117 5275 Viridiplantae View MSA
121349328 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.917     High  
cufflinks 18.704     High  
cufflinks 16.127     High  
cufflinks 16.817     High  
cufflinks 13.67     High  
cufflinks 18.84     High  
cufflinks 18.784     High  
cufflinks 16.678     High  
cufflinks 12.848     High Low
cufflinks 9.023       Low
cufflinks 14.574     High  
cufflinks 26.768     High High
cufflinks 18.044     High  
cufflinks 13.498        
cufflinks 18.49     High  
cufflinks 27.901     High High
cufflinks 24.073     High  
cufflinks 34.183     High High
cufflinks 14.236     High  
cufflinks 19.612     High  

0 Strain