Gene : Seita.5G174500 S. italica v2.2
Defline:  (1 of 4) 3.1.3.24 - Sucrose-phosphate phosphatase / Sucrose-6-phosphate phosphatase Genomic Order:  1745
Name:  ? Seita.5G174500 Secondary Identifier:  ? PAC:32685816
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7238 Setaria italica pathologic  
Sitalica SUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G174500 0.5kb upstream 0.5kb upstream 5828 true scaffold_5: 18669878-18675705 Setaria italica
Seita.5G174500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 18669878-18670377 Setaria italica
Seita.5G174500 0.5kb downstream 0.5kb downstream 5828 true scaffold_5: 18670378-18676205 Setaria italica
Seita.5G174500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 18675706-18676205 Setaria italica
Seita.5G174500 1.0kb upstream 1.0kb upstream 6328 true scaffold_5: 18669378-18675705 Setaria italica
Seita.5G174500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 18669378-18670377 Setaria italica
Seita.5G174500 1.0kb downstream 1.0kb downstream 6328 true scaffold_5: 18670378-18676705 Setaria italica
Seita.5G174500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 18675706-18676705 Setaria italica
Seita.5G174500 2.0kb upstream 2.0kb upstream 7328 true scaffold_5: 18668378-18675705 Setaria italica
Seita.5G174500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 18668378-18670377 Setaria italica
Seita.5G174500 2.0kb downstream 2.0kb downstream 7328 true scaffold_5: 18670378-18677705 Setaria italica
Seita.5G174500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 18675706-18677705 Setaria italica
Seita.5G174500 5.0kb upstream 5.0kb upstream 10328 true scaffold_5: 18665378-18675705 Setaria italica
Seita.5G174500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 18665378-18670377 Setaria italica
Seita.5G174500 5.0kb downstream 5.0kb downstream 10328 true scaffold_5: 18670378-18680705 Setaria italica
Seita.5G174500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 18675706-18680705 Setaria italica
Seita.5G174500 10.0kb upstream 10.0kb upstream 15328 true scaffold_5: 18660378-18675705 Setaria italica
Seita.5G174500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 18660378-18670377 Setaria italica
Seita.5G174500 10.0kb downstream 10.0kb downstream 15328 true scaffold_5: 18670378-18685705 Setaria italica
Seita.5G174500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 18675706-18685705 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122065206 5267 Panicoideae View MSA
124591146 5269 Grass View MSA
122041652 5273 Angiosperm View MSA
123428930 5275 Viridiplantae View MSA
121349182 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.175        
cufflinks 13.045        
cufflinks 11.524     High  
cufflinks 15.755     High  
cufflinks 16.801     High  
cufflinks 11.201        
cufflinks 10.448        
cufflinks 13.358        
cufflinks 13.442     High  
cufflinks 6.483       Low
cufflinks 9.68        
cufflinks 12.134        
cufflinks 14.588     High  
cufflinks 9.218        
cufflinks 12.23        
cufflinks 9.785        
cufflinks 12.263        
cufflinks 2.184       Low
cufflinks 22.37     High High
cufflinks 14.563     High  

0 Strain