Gene : Seita.5G175600 S. italica v2.2
Defline:  (1 of 1) KOG0265//KOG0316 - U5 snRNP-specific protein-like factor and related proteins // Conserved WD40 repeat-containing protein Genomic Order:  1756
Name:  ? Seita.5G175600 Secondary Identifier:  ? PAC:32682582
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G175600 0.5kb upstream 0.5kb upstream 11228 true scaffold_5: 19278831-19290058 Setaria italica
Seita.5G175600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 19278831-19279330 Setaria italica
Seita.5G175600 0.5kb downstream 0.5kb downstream 11228 true scaffold_5: 19279331-19290558 Setaria italica
Seita.5G175600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 19290059-19290558 Setaria italica
Seita.5G175600 1.0kb upstream 1.0kb upstream 11728 true scaffold_5: 19278331-19290058 Setaria italica
Seita.5G175600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 19278331-19279330 Setaria italica
Seita.5G175600 1.0kb downstream 1.0kb downstream 11728 true scaffold_5: 19279331-19291058 Setaria italica
Seita.5G175600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 19290059-19291058 Setaria italica
Seita.5G175600 2.0kb upstream 2.0kb upstream 12728 true scaffold_5: 19277331-19290058 Setaria italica
Seita.5G175600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 19277331-19279330 Setaria italica
Seita.5G175600 2.0kb downstream 2.0kb downstream 12728 true scaffold_5: 19279331-19292058 Setaria italica
Seita.5G175600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 19290059-19292058 Setaria italica
Seita.5G175600 5.0kb upstream 5.0kb upstream 15728 true scaffold_5: 19274331-19290058 Setaria italica
Seita.5G175600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 19274331-19279330 Setaria italica
Seita.5G175600 5.0kb downstream 5.0kb downstream 15728 true scaffold_5: 19279331-19295058 Setaria italica
Seita.5G175600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 19290059-19295058 Setaria italica
Seita.5G175600 10.0kb upstream 10.0kb upstream 20728 true scaffold_5: 19269331-19290058 Setaria italica
Seita.5G175600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 19269331-19279330 Setaria italica
Seita.5G175600 10.0kb downstream 10.0kb downstream 20728 true scaffold_5: 19279331-19300058 Setaria italica
Seita.5G175600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 19290059-19300058 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116322 5267 Panicoideae View MSA
124578079 5269 Grass View MSA
122047753 5273 Angiosperm View MSA
121344393 5274 Embryophyte View MSA
123427446 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.252        
cufflinks 1.332       Low
cufflinks 2.823        
cufflinks 2.259        
cufflinks 2.243        
cufflinks 1.617        
cufflinks 2.501        
cufflinks 2.357        
cufflinks 1.745        
cufflinks 1.275       Low
cufflinks 1.654        
cufflinks 1.474       Low
cufflinks 3.22       High
cufflinks 4.565       High
cufflinks 2.052        
cufflinks 2.065        
cufflinks 2.686        
cufflinks 2.413        
cufflinks 2.189        
cufflinks 1.927        

0 Strain