Gene : Seita.5G179600 S. italica v2.2
Defline:  (1 of 3) PF13975 - gag-polyprotein putative aspartyl protease (gag-asp_proteas) Genomic Order:  1796
Name:  ? Seita.5G179600 Secondary Identifier:  ? PAC:32682444
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G179600 0.5kb upstream 0.5kb upstream 1787 true scaffold_5: 21676630-21678416 Setaria italica
Seita.5G179600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 21677917-21678416 Setaria italica
Seita.5G179600 0.5kb downstream 0.5kb downstream 1787 true scaffold_5: 21676130-21677916 Setaria italica
Seita.5G179600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 21676130-21676629 Setaria italica
Seita.5G179600 1.0kb upstream 1.0kb upstream 2287 true scaffold_5: 21676630-21678916 Setaria italica
Seita.5G179600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 21677917-21678916 Setaria italica
Seita.5G179600 1.0kb downstream 1.0kb downstream 2287 true scaffold_5: 21675630-21677916 Setaria italica
Seita.5G179600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 21675630-21676629 Setaria italica
Seita.5G179600 2.0kb upstream 2.0kb upstream 3287 true scaffold_5: 21676630-21679916 Setaria italica
Seita.5G179600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 21677917-21679916 Setaria italica
Seita.5G179600 2.0kb downstream 2.0kb downstream 3287 true scaffold_5: 21674630-21677916 Setaria italica
Seita.5G179600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 21674630-21676629 Setaria italica
Seita.5G179600 5.0kb upstream 5.0kb upstream 6287 true scaffold_5: 21676630-21682916 Setaria italica
Seita.5G179600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 21677917-21682916 Setaria italica
Seita.5G179600 5.0kb downstream 5.0kb downstream 6287 true scaffold_5: 21671630-21677916 Setaria italica
Seita.5G179600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 21671630-21676629 Setaria italica
Seita.5G179600 10.0kb upstream 10.0kb upstream 11287 true scaffold_5: 21676630-21687916 Setaria italica
Seita.5G179600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 21677917-21687916 Setaria italica
Seita.5G179600 10.0kb downstream 10.0kb downstream 11287 true scaffold_5: 21666630-21677916 Setaria italica
Seita.5G179600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 21666630-21676629 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122196899 5267 Panicoideae View MSA
124591131 5269 Grass View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain