Gene : Seita.5G179900 S. italica v2.2
Defline:  (1 of 2) PTHR24089:SF393 - NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC Genomic Order:  1799
Name:  ? Seita.5G179900 Secondary Identifier:  ? PAC:32685500
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G179900 0.5kb upstream 0.5kb upstream 9235 true scaffold_5: 22016097-22025331 Setaria italica
Seita.5G179900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 22016097-22016596 Setaria italica
Seita.5G179900 0.5kb downstream 0.5kb downstream 9235 true scaffold_5: 22016597-22025831 Setaria italica
Seita.5G179900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 22025332-22025831 Setaria italica
Seita.5G179900 1.0kb upstream 1.0kb upstream 9735 true scaffold_5: 22015597-22025331 Setaria italica
Seita.5G179900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 22015597-22016596 Setaria italica
Seita.5G179900 1.0kb downstream 1.0kb downstream 9735 true scaffold_5: 22016597-22026331 Setaria italica
Seita.5G179900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 22025332-22026331 Setaria italica
Seita.5G179900 2.0kb upstream 2.0kb upstream 10735 true scaffold_5: 22014597-22025331 Setaria italica
Seita.5G179900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 22014597-22016596 Setaria italica
Seita.5G179900 2.0kb downstream 2.0kb downstream 10735 true scaffold_5: 22016597-22027331 Setaria italica
Seita.5G179900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 22025332-22027331 Setaria italica
Seita.5G179900 5.0kb upstream 5.0kb upstream 13735 true scaffold_5: 22011597-22025331 Setaria italica
Seita.5G179900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 22011597-22016596 Setaria italica
Seita.5G179900 5.0kb downstream 5.0kb downstream 13735 true scaffold_5: 22016597-22030331 Setaria italica
Seita.5G179900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 22025332-22030331 Setaria italica
Seita.5G179900 10.0kb upstream 10.0kb upstream 18735 true scaffold_5: 22006597-22025331 Setaria italica
Seita.5G179900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 22006597-22016596 Setaria italica
Seita.5G179900 10.0kb downstream 10.0kb downstream 18735 true scaffold_5: 22016597-22035331 Setaria italica
Seita.5G179900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 22025332-22035331 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181907 5267 Panicoideae View MSA
124572884 5269 Grass View MSA
122049488 5273 Angiosperm View MSA
121343929 5274 Embryophyte View MSA
123425611 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.31       High
cufflinks 2.507       Low
cufflinks 2.395       Low
cufflinks 2.626       Low
cufflinks 2.594       Low
cufflinks 3.505        
cufflinks 4.009        
cufflinks 4.248        
cufflinks 3.765        
cufflinks 8.345       High
cufflinks 3.854        
cufflinks 4.733        
cufflinks 6.134       High
cufflinks 2.422       Low
cufflinks 3.538        
cufflinks 5.149        
cufflinks 5.661        
cufflinks 5.991       High
cufflinks 2.496       Low
cufflinks 4.481        

0 Strain