Gene : Seita.5G178900 S. italica v2.2
Defline:  (1 of 1) PTHR30371:SF3 - SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC, CHLOROPLASTIC Genomic Order:  1789
Name:  ? Seita.5G178900 Secondary Identifier:  ? PAC:32685958
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G178900 0.5kb upstream 0.5kb upstream 9236 true scaffold_5: 21029553-21038788 Setaria italica
Seita.5G178900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 21038289-21038788 Setaria italica
Seita.5G178900 0.5kb downstream 0.5kb downstream 9236 true scaffold_5: 21029053-21038288 Setaria italica
Seita.5G178900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 21029053-21029552 Setaria italica
Seita.5G178900 1.0kb upstream 1.0kb upstream 9736 true scaffold_5: 21029553-21039288 Setaria italica
Seita.5G178900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 21038289-21039288 Setaria italica
Seita.5G178900 1.0kb downstream 1.0kb downstream 9736 true scaffold_5: 21028553-21038288 Setaria italica
Seita.5G178900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 21028553-21029552 Setaria italica
Seita.5G178900 2.0kb upstream 2.0kb upstream 10736 true scaffold_5: 21029553-21040288 Setaria italica
Seita.5G178900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 21038289-21040288 Setaria italica
Seita.5G178900 2.0kb downstream 2.0kb downstream 10736 true scaffold_5: 21027553-21038288 Setaria italica
Seita.5G178900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 21027553-21029552 Setaria italica
Seita.5G178900 5.0kb upstream 5.0kb upstream 13736 true scaffold_5: 21029553-21043288 Setaria italica
Seita.5G178900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 21038289-21043288 Setaria italica
Seita.5G178900 5.0kb downstream 5.0kb downstream 13736 true scaffold_5: 21024553-21038288 Setaria italica
Seita.5G178900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 21024553-21029552 Setaria italica
Seita.5G178900 10.0kb upstream 10.0kb upstream 18736 true scaffold_5: 21029553-21048288 Setaria italica
Seita.5G178900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 21038289-21048288 Setaria italica
Seita.5G178900 10.0kb downstream 10.0kb downstream 18736 true scaffold_5: 21019553-21038288 Setaria italica
Seita.5G178900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 21019553-21029552 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040890 5273 Angiosperm View MSA
122179266 5267 Panicoideae View MSA
124574529 5269 Grass View MSA
121345503 5274 Embryophyte View MSA
123424505 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.898        
cufflinks 1.4        
cufflinks 3.748        
cufflinks 2.71        
cufflinks 4.565       High
cufflinks 1.302        
cufflinks 2.965        
cufflinks 4.682       High
cufflinks 4.837       High
cufflinks 0.745        
cufflinks 0.646        
cufflinks 0.23       Low
cufflinks 0.382       Low
cufflinks 4.217       High
cufflinks 0.254       Low
cufflinks 3.467        
cufflinks 0.281       Low
cufflinks 1.224        
cufflinks 4.36       High
cufflinks 0.261       Low

0 Strain