Gene : Seita.5G180300 S. italica v2.2
Defline:  (1 of 1) PTHR22781 - DELTA ADAPTIN-RELATED Genomic Order:  1803
Name:  ? Seita.5G180300 Secondary Identifier:  ? PAC:32686019
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G180300 0.5kb upstream 0.5kb upstream 3709 true scaffold_5: 22289694-22293402 Setaria italica
Seita.5G180300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 22292903-22293402 Setaria italica
Seita.5G180300 0.5kb downstream 0.5kb downstream 3709 true scaffold_5: 22289194-22292902 Setaria italica
Seita.5G180300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 22289194-22289693 Setaria italica
Seita.5G180300 1.0kb upstream 1.0kb upstream 4209 true scaffold_5: 22289694-22293902 Setaria italica
Seita.5G180300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 22292903-22293902 Setaria italica
Seita.5G180300 1.0kb downstream 1.0kb downstream 4209 true scaffold_5: 22288694-22292902 Setaria italica
Seita.5G180300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 22288694-22289693 Setaria italica
Seita.5G180300 2.0kb upstream 2.0kb upstream 5209 true scaffold_5: 22289694-22294902 Setaria italica
Seita.5G180300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 22292903-22294902 Setaria italica
Seita.5G180300 2.0kb downstream 2.0kb downstream 5209 true scaffold_5: 22287694-22292902 Setaria italica
Seita.5G180300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 22287694-22289693 Setaria italica
Seita.5G180300 5.0kb upstream 5.0kb upstream 8209 true scaffold_5: 22289694-22297902 Setaria italica
Seita.5G180300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 22292903-22297902 Setaria italica
Seita.5G180300 5.0kb downstream 5.0kb downstream 8209 true scaffold_5: 22284694-22292902 Setaria italica
Seita.5G180300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 22284694-22289693 Setaria italica
Seita.5G180300 10.0kb upstream 10.0kb upstream 13209 true scaffold_5: 22289694-22302902 Setaria italica
Seita.5G180300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 22292903-22302902 Setaria italica
Seita.5G180300 10.0kb downstream 10.0kb downstream 13209 true scaffold_5: 22279694-22292902 Setaria italica
Seita.5G180300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 22279694-22289693 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189634 5267 Panicoideae View MSA
124576930 5269 Grass View MSA
122043871 5273 Angiosperm View MSA
121345031 5274 Embryophyte View MSA
123425395 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.534       High
cufflinks 11.527        
cufflinks 9.314        
cufflinks 7.707       Low
cufflinks 7.687       Low
cufflinks 11.044        
cufflinks 10.073        
cufflinks 10.459        
cufflinks 7.535       Low
cufflinks 12.444       High
cufflinks 11.326        
cufflinks 7.849        
cufflinks 7.226       Low
cufflinks 7.441       Low
cufflinks 9.953        
cufflinks 11.148        
cufflinks 9.646        
cufflinks 13.641     High High
cufflinks 7.437       Low
cufflinks 9.237        

0 Strain