Gene : Seita.5G184700 S. italica v2.2
Defline:  (1 of 1) PTHR15141:SF38 - BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  1847
Name:  ? Seita.5G184700 Secondary Identifier:  ? PAC:32682961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G184700 0.5kb upstream 0.5kb upstream 14189 true scaffold_5: 23462611-23476799 Setaria italica
Seita.5G184700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 23462611-23463110 Setaria italica
Seita.5G184700 0.5kb downstream 0.5kb downstream 14189 true scaffold_5: 23463111-23477299 Setaria italica
Seita.5G184700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 23476800-23477299 Setaria italica
Seita.5G184700 1.0kb upstream 1.0kb upstream 14689 true scaffold_5: 23462111-23476799 Setaria italica
Seita.5G184700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 23462111-23463110 Setaria italica
Seita.5G184700 1.0kb downstream 1.0kb downstream 14689 true scaffold_5: 23463111-23477799 Setaria italica
Seita.5G184700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 23476800-23477799 Setaria italica
Seita.5G184700 2.0kb upstream 2.0kb upstream 15689 true scaffold_5: 23461111-23476799 Setaria italica
Seita.5G184700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 23461111-23463110 Setaria italica
Seita.5G184700 2.0kb downstream 2.0kb downstream 15689 true scaffold_5: 23463111-23478799 Setaria italica
Seita.5G184700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 23476800-23478799 Setaria italica
Seita.5G184700 5.0kb upstream 5.0kb upstream 18689 true scaffold_5: 23458111-23476799 Setaria italica
Seita.5G184700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 23458111-23463110 Setaria italica
Seita.5G184700 5.0kb downstream 5.0kb downstream 18689 true scaffold_5: 23463111-23481799 Setaria italica
Seita.5G184700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 23476800-23481799 Setaria italica
Seita.5G184700 10.0kb upstream 10.0kb upstream 23689 true scaffold_5: 23453111-23476799 Setaria italica
Seita.5G184700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 23453111-23463110 Setaria italica
Seita.5G184700 10.0kb downstream 10.0kb downstream 23689 true scaffold_5: 23463111-23486799 Setaria italica
Seita.5G184700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 23476800-23486799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184338 5267 Panicoideae View MSA
124583917 5269 Grass View MSA
122044451 5273 Angiosperm View MSA
121346556 5274 Embryophyte View MSA
123380406 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0        
cufflinks 1.976        
cufflinks 1.138        
cufflinks 1.126        
cufflinks 0.894       Low
cufflinks 2.02        
cufflinks 1.606        
cufflinks 0.945       Low
cufflinks 0.786       Low
cufflinks 1.544        
cufflinks 1.556        
cufflinks 2.448       High
cufflinks 2.147        
cufflinks 1.271        
cufflinks 2.501       High
cufflinks 1.626        
cufflinks 2.021        
cufflinks 2.604       High
cufflinks 0.841       Low
cufflinks 1.99        

0 Strain