Gene : Seita.5G184900 S. italica v2.2
Defline:  (1 of 1) PTHR11048:SF3 - PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL Genomic Order:  1849
Name:  ? Seita.5G184900 Secondary Identifier:  ? PAC:32681359
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G184900 0.5kb upstream 0.5kb upstream 8965 true scaffold_5: 23501965-23510929 Setaria italica
Seita.5G184900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 23510430-23510929 Setaria italica
Seita.5G184900 0.5kb downstream 0.5kb downstream 8965 true scaffold_5: 23501465-23510429 Setaria italica
Seita.5G184900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 23501465-23501964 Setaria italica
Seita.5G184900 1.0kb upstream 1.0kb upstream 9465 true scaffold_5: 23501965-23511429 Setaria italica
Seita.5G184900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 23510430-23511429 Setaria italica
Seita.5G184900 1.0kb downstream 1.0kb downstream 9465 true scaffold_5: 23500965-23510429 Setaria italica
Seita.5G184900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 23500965-23501964 Setaria italica
Seita.5G184900 2.0kb upstream 2.0kb upstream 10465 true scaffold_5: 23501965-23512429 Setaria italica
Seita.5G184900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 23510430-23512429 Setaria italica
Seita.5G184900 2.0kb downstream 2.0kb downstream 10465 true scaffold_5: 23499965-23510429 Setaria italica
Seita.5G184900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 23499965-23501964 Setaria italica
Seita.5G184900 5.0kb upstream 5.0kb upstream 13465 true scaffold_5: 23501965-23515429 Setaria italica
Seita.5G184900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 23510430-23515429 Setaria italica
Seita.5G184900 5.0kb downstream 5.0kb downstream 13465 true scaffold_5: 23496965-23510429 Setaria italica
Seita.5G184900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 23496965-23501964 Setaria italica
Seita.5G184900 10.0kb upstream 10.0kb upstream 18465 true scaffold_5: 23501965-23520429 Setaria italica
Seita.5G184900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 23510430-23520429 Setaria italica
Seita.5G184900 10.0kb downstream 10.0kb downstream 18465 true scaffold_5: 23491965-23510429 Setaria italica
Seita.5G184900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 23491965-23501964 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184638 5267 Panicoideae View MSA
124575772 5269 Grass View MSA
122046986 5273 Angiosperm View MSA
121346504 5274 Embryophyte View MSA
123428600 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.809        
cufflinks 3.866       Low
cufflinks 4.867        
cufflinks 4.655        
cufflinks 5.091        
cufflinks 3.485       Low
cufflinks 4.119       Low
cufflinks 5.686        
cufflinks 4.723        
cufflinks 9.196       High
cufflinks 6.076        
cufflinks 5.572        
cufflinks 6.462        
cufflinks 5.578        
cufflinks 6.433        
cufflinks 4.307        
cufflinks 6.795       High
cufflinks 5.675        
cufflinks 5.215        
cufflinks 6.25        

0 Strain