Gene : Seita.5G189800 S. italica v2.2
Defline:  (1 of 1) PTHR12555//PTHR12555:SF14 - UBIQUITIN FUSION DEGRADATON PROTEIN 1 Genomic Order:  1898
Name:  ? Seita.5G189800 Secondary Identifier:  ? PAC:32686301
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G189800 0.5kb upstream 0.5kb upstream 3570 true scaffold_5: 24274037-24277606 Setaria italica
Seita.5G189800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24274037-24274536 Setaria italica
Seita.5G189800 0.5kb downstream 0.5kb downstream 3570 true scaffold_5: 24274537-24278106 Setaria italica
Seita.5G189800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24277607-24278106 Setaria italica
Seita.5G189800 1.0kb upstream 1.0kb upstream 4070 true scaffold_5: 24273537-24277606 Setaria italica
Seita.5G189800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24273537-24274536 Setaria italica
Seita.5G189800 1.0kb downstream 1.0kb downstream 4070 true scaffold_5: 24274537-24278606 Setaria italica
Seita.5G189800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24277607-24278606 Setaria italica
Seita.5G189800 2.0kb upstream 2.0kb upstream 5070 true scaffold_5: 24272537-24277606 Setaria italica
Seita.5G189800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24272537-24274536 Setaria italica
Seita.5G189800 2.0kb downstream 2.0kb downstream 5070 true scaffold_5: 24274537-24279606 Setaria italica
Seita.5G189800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24277607-24279606 Setaria italica
Seita.5G189800 5.0kb upstream 5.0kb upstream 8070 true scaffold_5: 24269537-24277606 Setaria italica
Seita.5G189800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24269537-24274536 Setaria italica
Seita.5G189800 5.0kb downstream 5.0kb downstream 8070 true scaffold_5: 24274537-24282606 Setaria italica
Seita.5G189800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24277607-24282606 Setaria italica
Seita.5G189800 10.0kb upstream 10.0kb upstream 13070 true scaffold_5: 24264537-24277606 Setaria italica
Seita.5G189800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24264537-24274536 Setaria italica
Seita.5G189800 10.0kb downstream 10.0kb downstream 13070 true scaffold_5: 24274537-24287606 Setaria italica
Seita.5G189800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24277607-24287606 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185228 5267 Panicoideae View MSA
124576515 5269 Grass View MSA
122046586 5273 Angiosperm View MSA
121347183 5274 Embryophyte View MSA
123428055 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.307     High High
cufflinks 11.905       Low
cufflinks 12.987     High Low
cufflinks 15.308     High  
cufflinks 22.749     High  
cufflinks 9.759       Low
cufflinks 43.0     High High
cufflinks 9.995       Low
cufflinks 23.989     High  
cufflinks 18.666     High  
cufflinks 25.193     High  
cufflinks 21.436     High  
cufflinks 20.532     High  
cufflinks 24.961     High  
cufflinks 22.269     High  
cufflinks 17.389     High  
cufflinks 14.798     High  
cufflinks 30.928     High High
cufflinks 14.443     High  
cufflinks 21.347     High  

0 Strain