Gene : Seita.5G189100 S. italica v2.2
Defline:  (1 of 1) PTHR12741//PTHR12741:SF11 - LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 Genomic Order:  1891
Name:  ? Seita.5G189100 Secondary Identifier:  ? PAC:32681463
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6773 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G189100 0.5kb upstream 0.5kb upstream 25805 true scaffold_5: 24116703-24142507 Setaria italica
Seita.5G189100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24142008-24142507 Setaria italica
Seita.5G189100 0.5kb downstream 0.5kb downstream 25805 true scaffold_5: 24116203-24142007 Setaria italica
Seita.5G189100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24116203-24116702 Setaria italica
Seita.5G189100 1.0kb upstream 1.0kb upstream 26305 true scaffold_5: 24116703-24143007 Setaria italica
Seita.5G189100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24142008-24143007 Setaria italica
Seita.5G189100 1.0kb downstream 1.0kb downstream 26305 true scaffold_5: 24115703-24142007 Setaria italica
Seita.5G189100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24115703-24116702 Setaria italica
Seita.5G189100 2.0kb upstream 2.0kb upstream 27305 true scaffold_5: 24116703-24144007 Setaria italica
Seita.5G189100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24142008-24144007 Setaria italica
Seita.5G189100 2.0kb downstream 2.0kb downstream 27305 true scaffold_5: 24114703-24142007 Setaria italica
Seita.5G189100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24114703-24116702 Setaria italica
Seita.5G189100 5.0kb upstream 5.0kb upstream 30305 true scaffold_5: 24116703-24147007 Setaria italica
Seita.5G189100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24142008-24147007 Setaria italica
Seita.5G189100 5.0kb downstream 5.0kb downstream 30305 true scaffold_5: 24111703-24142007 Setaria italica
Seita.5G189100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24111703-24116702 Setaria italica
Seita.5G189100 10.0kb upstream 10.0kb upstream 35305 true scaffold_5: 24116703-24152007 Setaria italica
Seita.5G189100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24142008-24152007 Setaria italica
Seita.5G189100 10.0kb downstream 10.0kb downstream 35305 true scaffold_5: 24106703-24142007 Setaria italica
Seita.5G189100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24106703-24116702 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181169 5267 Panicoideae View MSA
124581568 5269 Grass View MSA
122042706 5273 Angiosperm View MSA
121310004 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.882       High
cufflinks 1.421        
cufflinks 0.055     Low Low
cufflinks 0.024     Low Low
cufflinks 0.104       Low
cufflinks 2.085        
cufflinks 3.238        
cufflinks 1.662        
cufflinks 1.802        
cufflinks 2.088        
cufflinks 4.349        
cufflinks 3.554        
cufflinks 2.716        
cufflinks 0.321        
cufflinks 2.813        
cufflinks 4.353        
cufflinks 2.471        
cufflinks 5.11        
cufflinks 0.125       Low
cufflinks 2.843        

0 Strain