Gene : Seita.5G192100 S. italica v2.2
Defline:  (1 of 1) PTHR11630:SF66 - DNA REPLICATION LICENSING FACTOR MCM4 Genomic Order:  1921
Name:  ? Seita.5G192100 Secondary Identifier:  ? PAC:32683682
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G192100 0.5kb upstream 0.5kb upstream 5866 true scaffold_5: 24688120-24693985 Setaria italica
Seita.5G192100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24688120-24688619 Setaria italica
Seita.5G192100 0.5kb downstream 0.5kb downstream 5866 true scaffold_5: 24688620-24694485 Setaria italica
Seita.5G192100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24693986-24694485 Setaria italica
Seita.5G192100 1.0kb upstream 1.0kb upstream 6366 true scaffold_5: 24687620-24693985 Setaria italica
Seita.5G192100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24687620-24688619 Setaria italica
Seita.5G192100 1.0kb downstream 1.0kb downstream 6366 true scaffold_5: 24688620-24694985 Setaria italica
Seita.5G192100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24693986-24694985 Setaria italica
Seita.5G192100 2.0kb upstream 2.0kb upstream 7366 true scaffold_5: 24686620-24693985 Setaria italica
Seita.5G192100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24686620-24688619 Setaria italica
Seita.5G192100 2.0kb downstream 2.0kb downstream 7366 true scaffold_5: 24688620-24695985 Setaria italica
Seita.5G192100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24693986-24695985 Setaria italica
Seita.5G192100 5.0kb upstream 5.0kb upstream 10366 true scaffold_5: 24683620-24693985 Setaria italica
Seita.5G192100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24683620-24688619 Setaria italica
Seita.5G192100 5.0kb downstream 5.0kb downstream 10366 true scaffold_5: 24688620-24698985 Setaria italica
Seita.5G192100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24693986-24698985 Setaria italica
Seita.5G192100 10.0kb upstream 10.0kb upstream 15366 true scaffold_5: 24678620-24693985 Setaria italica
Seita.5G192100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24678620-24688619 Setaria italica
Seita.5G192100 10.0kb downstream 10.0kb downstream 15366 true scaffold_5: 24688620-24703985 Setaria italica
Seita.5G192100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24693986-24703985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190534 5267 Panicoideae View MSA
124572568 5269 Grass View MSA
122046085 5273 Angiosperm View MSA
123428876 5275 Viridiplantae View MSA
121346646 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.668        
cufflinks 17.469     High  
cufflinks 0.026     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.08     Low Low
cufflinks 17.423     High  
cufflinks 8.856        
cufflinks 9.256        
cufflinks 6.627        
cufflinks 6.448        
cufflinks 11.456        
cufflinks 6.068        
cufflinks 5.776        
cufflinks 0.149       Low
cufflinks 10.65        
cufflinks 0.83        
cufflinks 8.858        
cufflinks 0.269       Low
cufflinks 0.242       Low
cufflinks 10.285        

0 Strain